CI01000050_02455292_02474612


Basic Information

Item Value
gene id CI01000050_02455292_02474612
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 2452500 ~ 2474612 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_02455292_02474612.mRNA
ATATAAATAAAGTTTAGTTCGATGTACAGCACTGTAATGCGATTATGGTGCAAGATAAACCGAAAGTGAAGTGTCACTCATTGGCTGTTAATATAGCAGATATATTGCAGCTTTCCTATGGCAGACAGATCAACTTGGAGAAACTTTTGTGGCGACAAAAGTACATTAACAGAGAAGTGAACCGTTTGTTGTGTTAAAAACAAAGAATTTTTTCAACATTCATCACTTGTTGTTCTGGCATGACTTCCTTGATCACATGATGTCTGATCTTTAGCAGTCATGCTGAAGGTAACTCTGTTGGGTGTTTCCTTCATCAGTTTCACTAAAATCAGTTCGGCCAATAAAGTAATACAGCTTATATTCTAAACTAACAACTCCCAAATCTCACTGCCCTCTCAACAGGACCACTAGTGGCCCCAAAAACATCAGAACACTAAAAACTTATTAATGTTTCAGTGTGATTGCATTGTACAACAAAATATCAAAACAAGTGGCATCTGTAAACAAATCTTGCTAGTTTTCTATGAACTAACTTCGGTTTATGTAATGCTAGACATTCAGACATTTTTTTAGTGTTGCTTAAAGCAGGGTTTTCAAGGCTTTAGATGTATATAATGTAAATATAATGATTCTCATGTTATCTTAAAATTTAAAGGAACCTATATAATGTCTTGTATAAAGACCCAGATTATACTGTGAATATGTCAAAATATTTTTCTAATAAGTTACATTATTACATTTTTTTCCTACTCATTATAGTACTTAATTGTTCGATGTATTATTTATTTAATCATTTATTTAGTTAATTTAATACGTTTGTATAGTTTATATTTTTACTTATTTATTTTAGTCTTTTTTAAGTATTTATCTAATTATACTTTATATATATATATACACACACACACACACACATTTCCCCGCAGCACTCTTTTGTGACCCCTTTTTAGTTTGAATCCTGTTTTAATAAATTTTTGGGCCACTGCATTTCTTCCCTCAGTCCACGTTGGGGTACAAAATCTTATTTTACAATATGAGAAATTTTATTTCACGATAACAATATATATCAATGATATATCGTGATATAGCTATTTTTGTTATTAAAATAAAAACAAAGGAGCAAATTACAAACAATAGGACAAATGCATTATAACAAACATATAAATTAGACAAATTAAGTTTTTTGGAACAATATGTTTATTTAACATGTAGTTAGAAATAGTACAGAAATTGAATTATAAAAATAAAGTACTGCATAGTCTTCACTGTATGAATTAAACAAATTTATTCTTATTAAAGGGGACCTATAATGCCCCTTTCACAAGATGTAATATAAGTCTCTGGTGTCTCCAGAATGTGTCTGTAAAGTTTCAGCTCAAAATACCCCACAGATCATTTATTGTAGCTGGTCAAATTTGCCCCTATTTGGGTGTGAGCAAAAACACGCCGTTTTTGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGCTCCCGCCCCCTTTCCAGAAGAGGGCGGAGCTTTAACAGCTCGCGCTTCGGTTGCTCAACAACAACAAAGCTGGAGAATCTCACACAGCCAAAATGAGGATTGTCAGTAACGGTGTTCAGCCTTACATTGCTCAAACCGGAGTCGACACTGATGGAGAGACTCAGGAAGAAGTTACAACTTTTAGACGTTTCTGAATGGTTAGTGGATAAATTTATGTAGTTGCTGTGGAGTTGATTCAACTCATGGACTAGCATGTGCCGTCATGTTAATCTTTTGTGCAAATCCAGTGTTGAATTGACCCTCGTTTGTGAAGCAGTCCGGCGTAAAATGACGGCATGACAACAACACTCTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCCCCGCCCCCTTTGTTGTGTGTTCTCGGGGGCGGGGTTTATGTAAATTTTAGGGTTTGTGATGTCACCAACCCAGGAAGAAGCTCGTTGTAGTCCCTACCAGCCGTTTGTTGTAGTCCTTAAAAAGCGATTTCTGTAAAAGTAAATATCTTCCTTTGCATTGAATTTTGAGCGTCGTAACTTTGCAGATGTTGTTTATGCTCAAACAGCAACATTACACACTAACTAAAGTTAAAAAAGTGAAATCATAATCAACCACCCCTTTAATGTAATATTTAATGCACTTCATGCTGTTGATAACAAAGATTGGAATATATTTACTTATTCCTTGTGTTTTTATATCAATATGGTATAAGATTATCCTGTTCAGTTCAATGTGATAAACGAGTTAGGTCAAAAGTAATCTAAAAGTAATCAAAAAGTAGTCCGATTATATTACCTAAAATGTGTAATGTAATGGATTACGTTACTAACTACAATTTTGGACTACAATTTGTAAGTAATCTACCCAGCACTGTATATATTTACATACCGTGATATACACGATGCAGCAAAATCTCTAACAGCAGACGTTCGGTACGATATATCGTCATACCGCCCGGCCCTAGCGTGCATGTGTGTTAACAGGAATACAAAGCTGTTAGGAAGGATTGTGGAGAGGTGGAGAGTCAGCGTGTTAATGCCTCTCACATGCTGGTAGTTAGACGTCCCGGATCAGAGCAGGGCCACAGTCTGGGAACGGGGTGCCCACAGTCACGAGGAGCTCCTGTGTGTTTGTTGACACTGCTAAAGAGTTCTGATATTACACAGAGTTGGAAAAGCTCACATGCACATGTGGAGAAATTTGCTGGTTATCATTCCATAGCTTTTAGCTTTGCTGACCTGAGGCAACAGGTCAAAATGGCCTAGCTGAGCATGGCAGGACAGCAGGACAATGACTACAAGTGGAGAGAGATCCGTGGAGCAAAGTTAGCCTCTCTCTTTGGACTGGATCAAGCAGCAAGCAAGGGGAATGAGTCTTTTCAGTACACGGCACCCAAACAGCCCCGCAAGAGCGCTGCCAACTCAGGACCCCCAACCCAAAAGCCAGCCTCTGCTCAGAATCCTCCTGCTGTTCTCTGTGCTACTGCAGTACATGCCTACAGATATGTTAACGGACAGTATGCAAAACAAGGCAAGCTGGGAGCTGCGGTCCTTGGAAATCATACCACTAAAGAGTACAAGATCCTGCTGTATGTCAGTCAACAGAAGCAGGTGACGGCCGCCAGGATCCACAGAGGCTTCATCCTCACTGTCCAGCCCAGTAACTACTGCACGTTTTATGATGACCAGAGACAGAATTGGTCACTGATGTTTGAATCAGAGAAAGCAGCTACAGACTTTTCTAAAGAGGTTTGTCTTGCCAAAGTGAACTGCGGCGGTCCGGTAGACTCTGTCGTGACCCAGGATCTTCTTCTTGGTGAGGGTCAGGGTGTGGAGAATGGAGACTCTTTAGAGGTGGCGTACTCTGGTTGGCTGCTGCAAAACCACACCATCGGACAGATGTTTGACTCCAATCTGAACAAAGACAAGCTGCTGAGACTGAAGCTCGGGGCTGGTAAGGTCATTAAGGGCTGGGAGGAGGGGATGTTGAACATGCGCAAAGGTGGAAGGCGCCTCATGGTGATTCCGCCCAGTCTCGCGTACGGATCGCAGGGCGTTCCCAACCGCGTGCCTCCGGACAGCATACTAGTCTTTGAAGCGGAGATCCGCCGGGTTAAGTTTGCAAAGGATGGAAGTTCGAGTGATTTGGCGGCTCCGTCTCCGGCTCCCAGCGTTGAGAGTCTGGGCCCCTCTGATTTGAACCAGCACCTCAGCTCTGCCCCACAACCTGGCAAACCCAGTGAACCGCCACTTCGAGCAAAATCAAACTCCCTCAGTGAACAGCTCAGTAATCCCGATGCCACTAAAGCTAAACTGATCTCACGCATGGCCAGAATGGGACCCGAGTGTGTCCAGACTCAAGGAACGCAGCAGTGCACCGTCGCCACAGCCTGTACACATGACCTCCGCCCCTCCGCCTTCAGTGCAGGGTACAGCCCTTTTACCTGTTTCTTTGGCAACGGCCAATCCACAGCCCATGATGCCAGGAGTCGTACATGCCTTTCAGGACCTAGTGATGTCACATCCTTCTTGATGACAGAGGCTCGACAACACAACACTGAAATCCGATTGGCTGTTGGGAAAGTGGGAGATAAACTGGACCACTTGTCCTCAAAGATTGATGACCTACAAAAGCAAGGCAGCGTTTCATTGGGCTTGTCGAACATGTCCATGGAAACAGCCATGATCATGCACAACATTCAGAGAATCATACAGGAGAATGAGTGTCTGAAGAAAGAGGTGTTTGAGAAAAGCTCGCGCATAGAGGAGCAGAACCGCAAGATCAGCGAGCTCATCAATCAGAACCAGAGGTATGTGGAGCAGAGTAATCTGATGATGGAACAGAGAAACGACTCTCTGAAGAACAGCAGTGAACAGAATCAGACCAGAATACTGCAGGCAGAACAAGACAAGCATGCACTGCCACTGGAATTGAGTTGGGATCAGGCACGTTTGACCGAGGAGTTGGCGTCATCTACAGCGCGCGTGTCGGAGCTGCAGCTGGAGTTGAGCGCGCAGCAGCAGAAGGCCGCGGCACTGCAGGCCAAACTCAACTCGGCCCTGCAGGACGGTCAGCAGCACAGCACACAGATCACAGCGCTGGAGGCTCAGACACTGGAGCTGAAGGAGACGGCAGACAGAGTGCAGGGTCAGTACAAGATGGAGAAGCAGAAGCGTAAGGAACTGGAGCTCAAACTCAACAACATGGAGGAAGAGCTGCAGGACATGAAAACAGAGAAGGACAGTCTGGAGCGAACTCTCTCTGAGAGGAAGCGGAAGTGGCAGGCCGAGAGACAGCGCTGCGATGAGGAACTGGAAGAGGTGAGGAGGGCTGGCCAGCAGGAGATGGACAACCTCAGGAGCCAGTTACGTAAAGCCAGAACGAGCACTGACCACGCAGCAGCGGAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_02455292_02474612.mRNA True 4931 mRNA 0.44 22 2452500 2474612

Neighbor

gene id symbol gene type direction distance location
CI01000050_02328316_02331115 TUBB4A.S, MGC53997, TUBB4B, TUBB4A, TUBB4B.L, TBB2C, TUBB2B coding upstream 120985 2328226 ~ 2331515 (+)
CI01000050_02308087_02311804 NA coding upstream 140602 2307239 ~ 2311898 (+)
CI01000050_02290349_02305843 WDR46 coding upstream 146477 2288927 ~ 2306023 (+)
CI01000050_02268620_02283626 NADK, NADKA coding upstream 167169 2268620 ~ 2285331 (+)
CI01000050_02211327_02213220 NA coding upstream 239011 2210794 ~ 2213489 (+)
CI01000050_02475370_02481302 NA coding downstream 758 2475370 ~ 2481302 (+)
CI01000050_02676712_02678594 UBE2D4, UBE2D4.L coding downstream 202100 2676712 ~ 2678633 (+)
CI01000050_02697366_02720081 DBNL, DBNLB coding downstream 222754 2697366 ~ 2721197 (+)
CI01000050_02745996_02750915 NA coding downstream 271384 2745996 ~ 2751232 (+)
CI01000050_02758917_02764495 SLD5, GINS4 coding downstream 284305 2758917 ~ 2765030 (+)
G212800 NA non-coding upstream 24435 2427855 ~ 2428065 (+)
G212797 NA non-coding upstream 32262 2419994 ~ 2420238 (+)
G212794 NA non-coding upstream 35098 2417000 ~ 2417402 (+)
G212791 NA non-coding upstream 38357 2406437 ~ 2414143 (+)
G212786 NA non-coding upstream 49808 2402456 ~ 2402692 (+)
G212703 NA non-coding downstream 33814 2508426 ~ 2509993 (+)
G212829 NA non-coding downstream 49401 2524013 ~ 2524374 (+)
G212862 NA non-coding downstream 99626 2574238 ~ 2574709 (+)
G212840 NA non-coding downstream 120371 2594983 ~ 2597587 (+)
G212888 NA non-coding downstream 134409 2609021 ~ 2611475 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 755092 1691374 ~ 1698973 (+)
CI01000050_01296683_01297763 SELENOK other upstream 1152894 1296365 ~ 1298255 (+)
G212184 NA other upstream 2018294 433684 ~ 434206 (+)
G212006 NA other upstream 2314489 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 2426088 12079 ~ 26412 (+)
G212927 NA other downstream 300227 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 368207 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 1330531 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 1475990 3931890 ~ 3957044 (+)
G214717 NA other downstream 1632970 4107582 ~ 4108280 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location