CI01000050_02697366_02720081 (DBNL, DBNLB)


Basic Information

Item Value
gene id CI01000050_02697366_02720081
gene name DBNL, DBNLB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 2697366 ~ 2721197 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_02697366_02720081.mRNA
GGCTCTCTTCACCTATGAGGGCAACACCAATGACATCAGGCTGGCAGAGAAAGGAGATGGTGGTCTGGAGGAGTTGGTTGAGGAGCTGAACAGTGGAAAGGTGATGTACGCTTTTTGCCGAGTTCAAGACCCCAACTCTGGCCTTCCCAAATACGTCCTCATCAACTGGACTGGTGAGGGCGTGAAAGATGCCAGAAAAGGCCAGTGTGCGAACCATGTGAGCTCTATGGCTAACTTTCTTAAGGGAGCTCATGTGACGATAAATGCACGAGCGGAGGAGGACGTGGAGCCTGACGCCATCATGCAGAAAGTCGCTAAAGCCTCAGGAGCCAACTACAGCTTTCACAAAGAGTCCAATCGCTTCAGAGATGCCGGGCCGCAGGGGCCTGTGGGATCTGTTTACCAGAAGACTAACGCCATGTCTGAAATCAAGAGAACCAACAAAGACACTTTCTGGGCCCAAGCAGAGAAAGACGAGGAGAAGCGTATCCAGGAGGAGAGGAGAAGGGCAGCGGATGAGAGGCAGAGGCTGGAGAGAGAGAGGAAGGACCGAGAGGTCAAAGAGGCGGAGTTACGGGACAAGAAAGCCAAAGAGAGAGCGTCACAGATCGATGAACAGAAAAAGTACCAGCAGCAGCAGGAGGTGGATAATCGAGGCCAGCAGAAACAGCAGTGGGAGGAGGAAGAGGAGGAGAGGAAGCAGGCAGTACAGCAGAAACCCTTTAAACGTGGAGAGTCGGTGGAAAAAGCCAACGAAGCTGCGGCTCTCGTTTCCCAGCGCTCCGTTAATCCCAGAGAAATGTTCAAACAGAGAGAGATGGGAATCAACACTTCTAACAAAGATAACTCTCAATACAGTCCAAAACCAGGGCGGTTGAACAGCCCTTTTCTGTCCAAGCAGTCATGTGACCCAGAGCCATTTCGCTCTCCTGTGCGTCAGGCCTCGCCTTTACGAGCCAGAGCCCCTTATTTGTGTCAGTCAATCAGCTGGATGTCAGCACCACCTGGTGGGGAAGATGTACAAGCGGTCAGTAATGATTATGAAGATGTGGTGGAACAAAGGCAGCCACAATATGAGGCAGTAGTGGAACCAGACGCCATCTATGAGGAACCACCGCAGGTGGAGGAACAGAACACATATGATACGGCAGATGATCGCGGGGTCTGCGCCAGGGCTCTGTATGACTACCAAGCTGCTGATGACACAGAGATCTCGTTTGACCCGGATGAGATCATCACCGGCATTGAGATGATTGACGAAGGCTGGTGGCGAGGATACAGTCCGGATGGCCATTTCGGAATGTTCCCAGCAAATTACGTCGAACTTATCTAACACAGCTCAACGTATCCCCCTCATTAGAGTCGCGCCGCATTGATTTGCAAATCTCGATGATCCAAGCGTGTCCGGTATTTTTGATTTGAAAAGACTGAAGCTAAAATCATGGACCAAAAGAGTGATGATCACGTGACCGGGGGGGGTATTTAAACTAGATTGATATTTCATACTGTATTAGTAGAAGTGTCTTGTTCATTTTATTTCATTTCAAGATGTTATAATTTTATAAAACAATACTTTGATTTCACGTACGCTGGCAGATGCCCCAGAAGCAACTTAAACTTGCTATTCATGCAGGAATCCTGCGTGGTTAAATTAGTGCTTGTGGTGACATTCCTGTGATCTTTTTAGACTGAACCTTTTCTCAGTGTATTTGAAGACATTCCTTTTGAACATTTCAAGCGTTTGGATTTCAATGACATTATATCGTTCCAGAGATGTTTGGTGCAGATGTTTGTAGTAGTTAAAACATATCGGTCCCGTTTTGCCTTGGTTTTTGCCTTCTTTTCTCCACAAGCCTGAGCGTGACTGCCTTGCTTTCTCGATGATCACAGCACAGACGTTTTGCTGCAGTTTAGTTCACCGAGGCTGGACTGAAATCAGGAGATGAGATGAATTTATTTGCTGTGTTCTATACGGCACGTGTTTAAAATCATGGATGCAGCTTGAAAATTAAGGTTGTTAATATCCTTTAGATAGTCGTGAATGATTTAAGATCGGTCTGAGTGGGACCTCAGCTTTCCTGTCTGCTCAGATATGTGGAGAATATTAATACTGTGATTTTTTTAGGTTTCAGGGAAGCATCATTCTTTCATCTTCTTGCCTTTGGGTCCCAGTGGAGTCTGCATTGTGTTTAGATGCCATACGGATATGCCAAGGCTCAAAGAGAAGATTTATTTAGACCCTTGCATTTTTACCATTCACACACTTTACTGTCAGTGCTGTGCCAATACGAGAGTGTGAGGAGAAGTATTTTTGAGGAAATGTTTGAGGTTTCATTTTTAACAAGAACCCATGTCATCTCAAAGTCATTCAACGGTGGTGTAGTTCCTCTCAAGAGCTCATTGTGAAAATCTAACAAGTCTTGATGACATTGTAACTTCATTTAAAAGA

Function

symbol description
dbnlb Predicted to enable actin filament binding activity. Predicted to be involved in generation of neurons; postsynaptic actin cytoskeleton organization; and regulation of actin filament polymerization. Predicted to act upstream of or within receptor-mediated endocytosis; ruffle assembly; and synapse assembly. Predicted to be located in several cellular components, including cytoplasmic vesicle; perikaryon; and ruffle. Predicted to be active in several cellular components, including lamellipodium; postsynaptic density; and postsynaptic membrane. Predicted to colocalize with actin filament. Orthologous to human DBNL (drebrin like).
dbnl Enables cadherin binding activity. Predicted to be involved in several processes, including Rac protein signal transduction; nervous system development; and podosome assembly. Located in cytoplasm.

GO:

id name namespace
GO:0097178 ruffle assembly biological_process

KEGG:

id description
K20520 DBNL, ABP1; drebrin-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_02697366_02720081.mRNA True 2449 mRNA 0.46 14 2697366 2721197

Neighbor

gene id symbol gene type direction distance location
CI01000050_02676712_02678594 UBE2D4, UBE2D4.L coding upstream 18733 2676712 ~ 2678633 (+)
CI01000050_02475370_02481302 NA coding upstream 216064 2475370 ~ 2481302 (+)
CI01000050_02455292_02474612 NA coding upstream 222754 2452500 ~ 2474612 (+)
CI01000050_02328316_02331115 TUBB4A.S, MGC53997, TUBB4B, TUBB4A, TUBB4B.L, TBB2C, TUBB2B coding upstream 365851 2328226 ~ 2331515 (+)
CI01000050_02308087_02311804 NA coding upstream 385468 2307239 ~ 2311898 (+)
CI01000050_02745996_02750915 NA coding downstream 24799 2745996 ~ 2751232 (+)
CI01000050_02758917_02764495 SLD5, GINS4 coding downstream 37720 2758917 ~ 2765030 (+)
CI01000050_02778979_02781848 NA coding downstream 57782 2778979 ~ 2782645 (+)
CI01000050_02814263_02825948 POLR3D coding downstream 93066 2814263 ~ 2826153 (+)
CI01000050_02833976_02838912 NA coding downstream 112691 2833888 ~ 2839484 (+)
G212888 NA non-coding upstream 85891 2609021 ~ 2611475 (+)
G212840 NA non-coding upstream 99779 2594983 ~ 2597587 (+)
G212862 NA non-coding upstream 122657 2574238 ~ 2574709 (+)
G212829 NA non-coding upstream 172992 2524013 ~ 2524374 (+)
G212703 NA non-coding upstream 187373 2508426 ~ 2509993 (+)
G212928 NA non-coding downstream 54244 2775441 ~ 2775877 (+)
G212929 NA non-coding downstream 54797 2775994 ~ 2776220 (+)
G212930 NA non-coding downstream 55146 2776343 ~ 2776772 (+)
G212912 NA non-coding downstream 62426 2783623 ~ 2797904 (+)
G212933 NA non-coding downstream 82795 2803992 ~ 2804311 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 999958 1691374 ~ 1698973 (+)
CI01000050_01296683_01297763 SELENOK other upstream 1397760 1296365 ~ 1298255 (+)
G212184 NA other upstream 2263160 433684 ~ 434206 (+)
G212006 NA other upstream 2559355 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 2670954 12079 ~ 26412 (+)
G212927 NA other downstream 53642 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 121622 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 1083946 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 1229405 3931890 ~ 3957044 (+)
G214717 NA other downstream 1386385 4107582 ~ 4108280 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location