CI01000050_02833976_02838912


Basic Information

Item Value
gene id CI01000050_02833976_02838912
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 2833888 ~ 2839484 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_02833976_02838912.mRNA
CTATATGGAGCAGATTACACAACTGAATAAGCACACACTGTCAGCTGTCTTCATGTCGCCACCGGGTCCGTGTGCAGTGAATGTGAGAATGGGCTTCAGTGCGCTCGTGTGCGCGTGTGTTCTCGCGTTCTGCAGCGCTGCTCCGGTAAAACGCCTGCAGAGGAACGAGCCTGAGAACAACAGACCGATCATCGGTATTCTGACGCAAGAGGTTGACAATGAGGCTATGAAAATATTTGGAAAGACCTACATCCCTTCATCATATGTAAAGTACATCGAATCCGGGGGAGCTAGAGTTGTGCCAATTAGTCTTATTCTCATCGGAGGCTCTGTGAACCTGGAGACATCTGACTTTGCTCACACAGCTGGGATTTACTTCAGACTTGCTCTTAAGGCACATGATGAGGGCGAGTACTTTCCCATCTGGGGAACATGCCTGGGATTTCAGCTGCTCACTGTGCTGGTGGCCAGAGAAAACCTGTTGAGTAAGACTACAGCAGAGAATGTCACTTATCCACTCAACTTCAGCTCAGAAGCTCAATCCAGTCGTATGTTTGCCAATGTTCCACCTGACCTCCGTAAAGCATTGTCCCAGGAACCACTCACTGCAAACTTCCACCACTACGGAGTGACTAAAGAGGCATTCATGGGTAATGAGAAACTGAAAAGCTTCTTTTCAGTGCTGTCCACAAACATAGCAGAAAACGGCCTTGAGTTTGTTTCCACCATGGAAGGCAGGAAATACCCTTTCTATGGGGTTCAGTGGCATCCGGAGGTGAACCGCTTTCAGTGGGACCCTCGTTACAACTTTCCTCATTCCAGCAACGCTGTGCGCATCTCATCCGTACTGGCTGAATTCTTTGTAAATGAGGGAAGGAGAAGCTCCCATCACTTCAGTGAAGCAGCAGAAGAGAGCCGCGCGCTTATATACAACTACAACCCTGTTTATGTGGCAAATATCTCTGCGTATGAACAGTCTTATTTCTTCTGAGAGACACATAATATTGAAGGATGCTCAGGAAGGAAACCCTTCTCAGAAATGTTCAGATTGACAAATGTACTGTAATTATCACGCTCAGACCTCATATTTAAGAATATAATGTTTTTAACAGAGAGACAAATGAAATCATCAGTGTTTTCTTGAATTATTTTGTGATTTTTCTTTTAATTAATGTTATTACATATTCAGTTTTTTAAACTAAAAAAAATACACATGACTAAATTTAAAAGAGCCAGGAGGCCTTTCTGTGTGGAGTTTGCATTAAACATCAAAGGGACTTTATGCTTTATTTGCCAGAAGAGGGCAGTATTGTCTCACATGGCATGTTTATTCACAATTTGATTGTTTTTTTCCCATTGCATTGTTTTACAAAATAACCCAAAGAATTTGTTTTACAATAAGGATAAATATACTGTAGTACATTATTTAAACTGGATTTTAAAAAAGTTTTTATATTTGTAACTGTAATATACATATATATATTATATATTACATAAAAGAGAAAATTAATTGTATGTATTATTTAAATGTATTATTAAATGTGTTATTCCTGCATAGAAAAA

Function

NR:

description
LOC553228 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_02833976_02838912.mRNA True 1563 mRNA 0.40 8 2833888 2839484

Neighbor

gene id symbol gene type direction distance location
CI01000050_02814263_02825948 POLR3D coding upstream 7735 2814263 ~ 2826153 (+)
CI01000050_02778979_02781848 NA coding upstream 51243 2778979 ~ 2782645 (+)
CI01000050_02758917_02764495 SLD5, GINS4 coding upstream 68858 2758917 ~ 2765030 (+)
CI01000050_02745996_02750915 NA coding upstream 82656 2745996 ~ 2751232 (+)
CI01000050_02697366_02720081 DBNL, DBNLB coding upstream 112691 2697366 ~ 2721197 (+)
CI01000050_02852118_02864754 RNF122 coding downstream 12634 2852118 ~ 2865822 (+)
CI01000050_02878198_02942065 VPS13A coding downstream 38714 2878198 ~ 2942735 (+)
CI01000050_02978801_02980782 CEP78 coding downstream 139317 2978801 ~ 2980782 (+)
CI01000050_02995539_03115563 CABIN1 coding downstream 156055 2995539 ~ 3116078 (+)
CI01000050_03129712_03134758 TBX16 coding downstream 290228 3129712 ~ 3134963 (+)
G212943 NA non-coding upstream 2893 2829560 ~ 2830995 (+)
G212934 NA non-coding upstream 24971 2808560 ~ 2808917 (+)
G212933 NA non-coding upstream 29577 2803992 ~ 2804311 (+)
G212912 NA non-coding upstream 35984 2783623 ~ 2797904 (+)
G212930 NA non-coding upstream 57116 2776343 ~ 2776772 (+)
G212948 NA non-coding downstream 29081 2868565 ~ 2868795 (+)
G212950 NA non-coding downstream 31415 2870899 ~ 2871163 (+)
G212969 NA non-coding downstream 123717 2963201 ~ 2966079 (+)
G212970 NA non-coding downstream 137725 2977209 ~ 2977436 (+)
G212973 NA non-coding downstream 154901 2994385 ~ 2994674 (+)
G212927 NA other upstream 58755 2774839 ~ 2775133 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 1136480 1691374 ~ 1698973 (+)
CI01000050_01296683_01297763 SELENOK other upstream 1534282 1296365 ~ 1298255 (+)
G212184 NA other upstream 2399682 433684 ~ 434206 (+)
G212006 NA other upstream 2695877 82604 ~ 138011 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 965659 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 1111118 3931890 ~ 3957044 (+)
G214717 NA other downstream 1268098 4107582 ~ 4108280 (+)
CI01000050_04591548_04592778 NA other downstream 1752071 4589926 ~ 4593049 (+)

Expression


Co-expression Network