RNA id: CI01000050_02833976_02838912.mRNA



Basic Information


Item Value
RNA id CI01000050_02833976_02838912.mRNA
length 1563
RNA type mRNA
GC content 0.40
exon number 8
gene id CI01000050_02833976_02838912
representative True

Chromosome Information


Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 2833888 ~ 2839484 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATATGGAGCAGATTACACAACTGAATAAGCACACACTGTCAGCTGTCTTCATGTCGCCACCGGGTCCGTGTGCAGTGAATGTGAGAATGGGCTTCAGTGCGCTCGTGTGCGCGTGTGTTCTCGCGTTCTGCAGCGCTGCTCCGGTAAAACGCCTGCAGAGGAACGAGCCTGAGAACAACAGACCGATCATCGGTATTCTGACGCAAGAGGTTGACAATGAGGCTATGAAAATATTTGGAAAGACCTACATCCCTTCATCATATGTAAAGTACATCGAATCCGGGGGAGCTAGAGTTGTGCCAATTAGTCTTATTCTCATCGGAGGCTCTGTGAACCTGGAGACATCTGACTTTGCTCACACAGCTGGGATTTACTTCAGACTTGCTCTTAAGGCACATGATGAGGGCGAGTACTTTCCCATCTGGGGAACATGCCTGGGATTTCAGCTGCTCACTGTGCTGGTGGCCAGAGAAAACCTGTTGAGTAAGACTACAGCAGAGAATGTCACTTATCCACTCAACTTCAGCTCAGAAGCTCAATCCAGTCGTATGTTTGCCAATGTTCCACCTGACCTCCGTAAAGCATTGTCCCAGGAACCACTCACTGCAAACTTCCACCACTACGGAGTGACTAAAGAGGCATTCATGGGTAATGAGAAACTGAAAAGCTTCTTTTCAGTGCTGTCCACAAACATAGCAGAAAACGGCCTTGAGTTTGTTTCCACCATGGAAGGCAGGAAATACCCTTTCTATGGGGTTCAGTGGCATCCGGAGGTGAACCGCTTTCAGTGGGACCCTCGTTACAACTTTCCTCATTCCAGCAACGCTGTGCGCATCTCATCCGTACTGGCTGAATTCTTTGTAAATGAGGGAAGGAGAAGCTCCCATCACTTCAGTGAAGCAGCAGAAGAGAGCCGCGCGCTTATATACAACTACAACCCTGTTTATGTGGCAAATATCTCTGCGTATGAACAGTCTTATTTCTTCTGAGAGACACATAATATTGAAGGATGCTCAGGAAGGAAACCCTTCTCAGAAATGTTCAGATTGACAAATGTACTGTAATTATCACGCTCAGACCTCATATTTAAGAATATAATGTTTTTAACAGAGAGACAAATGAAATCATCAGTGTTTTCTTGAATTATTTTGTGATTTTTCTTTTAATTAATGTTATTACATATTCAGTTTTTTAAACTAAAAAAAATACACATGACTAAATTTAAAAGAGCCAGGAGGCCTTTCTGTGTGGAGTTTGCATTAAACATCAAAGGGACTTTATGCTTTATTTGCCAGAAGAGGGCAGTATTGTCTCACATGGCATGTTTATTCACAATTTGATTGTTTTTTTCCCATTGCATTGTTTTACAAAATAACCCAAAGAATTTGTTTTACAATAAGGATAAATATACTGTAGTACATTATTTAAACTGGATTTTAAAAAAGTTTTTATATTTGTAACTGTAATATACATATATATATTATATATTACATAAAAGAGAAAATTAATTGTATGTATTATTTAAATGTATTATTAAATGTGTTATTCCTGCATAGAAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU241516 lncRNA upstream 2893 2829560 ~ 2830995 (+) True G212943
TU241498 lncRNA upstream 24971 2808560 ~ 2808917 (+) True G212934
TU241497 lncRNA upstream 29577 2803992 ~ 2804311 (+) True G212933
TU241476 lncRNA upstream 35984 2783623 ~ 2797904 (+) True G212912
TU241494 lncRNA upstream 57116 2776343 ~ 2776772 (+) True G212930
TU241521 lncRNA downstream 29081 2868565 ~ 2868795 (+) True G212948
TU241523 lncRNA downstream 31415 2870899 ~ 2871163 (+) True G212950
TU241563 lncRNA downstream 123717 2963201 ~ 2966079 (+) True G212969
TU241571 lncRNA downstream 137725 2977209 ~ 2977436 (+) True G212970
TU241574 lncRNA downstream 154901 2994385 ~ 2994674 (+) True G212973
CI01000050_02814263_02825948.mRNA mRNA upstream 7735 2814263 ~ 2826153 (+) True CI01000050_02814263_02825948
CI01000050_02778979_02781848.mRNA mRNA upstream 51243 2778979 ~ 2782645 (+) True CI01000050_02778979_02781848
CI01000050_02758917_02764495.mRNA mRNA upstream 68858 2758917 ~ 2765030 (+) True CI01000050_02758917_02764495
CI01000050_02745996_02750915.mRNA mRNA upstream 82656 2745996 ~ 2751232 (+) True CI01000050_02745996_02750915
CI01000050_02697366_02720081.mRNA mRNA upstream 112691 2697366 ~ 2721197 (+) True CI01000050_02697366_02720081
CI01000050_02852118_02864754.mRNA mRNA downstream 12634 2852118 ~ 2864897 (+) False CI01000050_02852118_02864754
CI01000050_02878198_02942065.mRNA mRNA downstream 38714 2878198 ~ 2942735 (+) True CI01000050_02878198_02942065
CI01000050_02978801_02980782.mRNA mRNA downstream 139317 2978801 ~ 2980782 (+) True CI01000050_02978801_02980782
CI01000050_02995539_03115563.mRNA mRNA downstream 156055 2995539 ~ 3116078 (+) True CI01000050_02995539_03115563
CI01000050_03129712_03134758.mRNA mRNA downstream 290228 3129712 ~ 3134963 (+) True CI01000050_03129712_03134758
TU241491 other upstream 58755 2774839 ~ 2775133 (+) True G212927
TU240958 other upstream 1136480 1691803 ~ 1697408 (+) False CI01000050_01691894_01697791
TU240937 other upstream 1534282 1299364 ~ 1299606 (+) True G212403
TU240705 other upstream 2399682 433684 ~ 434206 (+) True G212184
TU240505 other upstream 2695877 82604 ~ 138011 (+) True G212006
TU241503 other downstream 3335 2842819 ~ 2843139 (+) True G212938
TU243391 other downstream 965659 3805143 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243394 other downstream 968130 3807614 ~ 3808739 (+) False CI01000050_03807697_03808793
TU243390 other downstream 968211 3807695 ~ 3808739 (+) True CI01000050_03807697_03808793
TU243465 other downstream 1111118 3950602 ~ 3957044 (+) True CI01000050_03938328_03956122

Expression Profile