CI01000050_03129712_03134758 (TBX16)


Basic Information

Item Value
gene id CI01000050_03129712_03134758
gene name TBX16
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3129712 ~ 3134963 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_03129712_03134758.mRNA
AAAGCCTGCTGCCTTCAGAGAGCATTTCTTCCTAATGAGATTAACCATCAAGGAACGATCATGTCTAGACACCCTGAATACGCAACCTCCTCCCTCCCACCAAACAGCTGCTTCTCAGACCTCAAGCACAATTTCAGCCTCCCTCCTCCGCCTTCCATGGCTGGAGCTGGTGATTCCTATCACCAAGGCAACATCCGAATGACTCTAGAGGATCCGGATCTGTGGAGATCCTTCCATGAGATCGGCACTGAGATGATCATCACCAAACCTGGCAGGAGGATGTTTCCACACTGCAAAATCAGCTTGTCTGGATTGGTGCCTTATGCAAAGTACATCTTACTGGTGGACATGGTACCTGAAGACGGTCTCAGATATAAGTGGAACAAGGACAAGTGGGAAGTCGCAGGTAAGGCTGAGCCTCAGCCGCCCTACAGGACGTACCTACACCCTGATTCACCAGCGCCCGGCAGCCACTGGATGAAACAGCCCGTGTCCTTCCTCAAACTCAAGCTTACCAACAATGCCCTGGACCAGCATGGACATATTATCCTTCACTCCATGCACCGCTACCACCCGCGTTTCCATATCGTCCAGGCTGATGATCTGTACAGTGTACGCTGGAGTGTCTTCCAAACCTTTACCTTCCCCGAGACGACCTTCACTGCTGTCACTGCGTACCAGAACACAAAGATCACAAAGCTGAAAATCGACCACAATCCCTTTGCCAAAGGATTCAGAGATGAGGGTACAAACTCTAAAAGACGAGCAAACAGAAGTCTGGCTGATCCTGAGAGAGTTGCAAAGAAAATGAACGTGTCAAAAGACTCTGAACATGGAAGCCCAAGAGATATCCAACAGTCCTCTTGTGAAGGTCTGGATGATGAACACACGGGCCGTAAGGAGTCGGAGGTGAAGGCCGAGCGGTACTCCCCATGGGGAGGTGTGTGCGACCGGGACAACAGCCATGCTCTCCGGGCAGAGTCCCCACTGGGCTCGGACCCTCGAGACATGTACAGCTCTGAACAGCTCGTACCTGGACAGAACACGTACCAGCCGTACAGATTTCATGAATACGGCAAGTCCCCGTCTCCATCCTCCTCCAGTGCTGGCAGCAGCAGTGGATGTGGAAGCACCGGCCGCTCCAGCTTTGAGTCCCGCGTGCCGGATGTTGCCACCGTGCCCGATCACGACACCTCCAGCAAGCCCTCCGCCCCAGAGTTCGGCCTCCCCCCCTGCCCACCACATCCCTCCGCAGGGCACCAGGACTACACAGGGGTGCTGAACATGGCCATAGCCCAGGCCAAGCCAGGTATGCTGGGCCACCATCCTCTCTACACCCCCTACAGCACAGAACAGTCTCTGGGACAGTGGAGCGGGGCAGCGTCCGCTCAATACCCCCCTCCACCACCTCCCCATCATCACCTACCCAGCGAATACAGCACCCAGGCCGTCCATCACGGGTATCACCACGGAAATGTAGGGGACTGGAGCCAATACCCATTGTTCTCTTACTCGTGCTGGTGAGTTGGACAGCTGAACAAGAGACGGGACGAGATGCTTTCTAAAGTCTGCACAATGAGGTCTGGTTCTGACCCGTATGATGGCACACGTCACCCGGTACCTGCGAGCACCAGATAAACTCTAGAACTGTGAGTGAATGTAATGAGGAAGTGGCACTAACTGAAATGTTGTTTGTGAGTCAACTTGGATGCAAAAGTGCAATTACAAA

Function

symbol description
tbx16 Enables transcription cis-regulatory region binding activity. Acts upstream of or within several processes, including Kupffer's vesicle development; animal organ development; and blood vessel morphogenesis. Located in chromatin and nucleus. Is expressed in several structures, including forerunner cell group; germ ring; mesoderm; presumptive mesoderm; and spinal cord.

NR:

description
T-box containing protein

GO:

id name namespace
GO:0035775 pronephric glomerulus morphogenesis biological_process

KEGG:

id description
K10180 TBX6; T-box protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_03129712_03134758.mRNA True 1729 mRNA 0.54 9 3129712 3134963

Neighbor

gene id symbol gene type direction distance location
CI01000050_02995539_03115563 CABIN1 coding upstream 13634 2995539 ~ 3116078 (+)
CI01000050_02978801_02980782 CEP78 coding upstream 148930 2978801 ~ 2980782 (+)
CI01000050_02878198_02942065 VPS13A coding upstream 186977 2878198 ~ 2942735 (+)
CI01000050_02852118_02864754 RNF122 coding upstream 264815 2852118 ~ 2865822 (+)
CI01000050_02833976_02838912 NA coding upstream 290228 2833888 ~ 2839484 (+)
CI01000050_03224108_03230670 NA coding downstream 89094 3224057 ~ 3231161 (+)
CI01000050_03238081_03239214 NPY8BR coding downstream 102754 3237717 ~ 3239314 (+)
CI01000050_03272821_03284544 KCTD9, KCTD9A coding downstream 137256 3272219 ~ 3284762 (+)
CI01000050_03306831_03324064 NA coding downstream 171868 3306831 ~ 3324244 (+)
CI01000050_03392003_03421994 FGFR1A, FGFR1 coding downstream 257040 3392003 ~ 3422913 (+)
G212973 NA non-coding upstream 135038 2994385 ~ 2994674 (+)
G212970 NA non-coding upstream 152276 2977209 ~ 2977436 (+)
G212969 NA non-coding upstream 163633 2963201 ~ 2966079 (+)
G212950 NA non-coding upstream 258549 2870899 ~ 2871163 (+)
G212948 NA non-coding upstream 260917 2868565 ~ 2868795 (+)
G212980 NA non-coding downstream 23163 3158126 ~ 3158455 (+)
G212985 NA non-coding downstream 32804 3167767 ~ 3168197 (+)
G212986 NA non-coding downstream 37661 3172624 ~ 3172954 (+)
G212988 NA non-coding downstream 39741 3174704 ~ 3174999 (+)
G213000 NA non-coding downstream 55556 3190519 ~ 3190739 (+)
G212927 NA other upstream 354579 2774839 ~ 2775133 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 1432304 1691374 ~ 1698973 (+)
CI01000050_01296683_01297763 SELENOK other upstream 1830106 1296365 ~ 1298255 (+)
G212184 NA other upstream 2695506 433684 ~ 434206 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 670180 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 815639 3931890 ~ 3957044 (+)
G214717 NA other downstream 972619 4107582 ~ 4108280 (+)
CI01000050_04591548_04592778 NA other downstream 1456592 4589926 ~ 4593049 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 2272622 5407585 ~ 5409417 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036790 tbx16 coding NC_007119.7 CM002892.2 51733907 ~ 51753604 (-)