CI01000050_02995539_03115563 (CABIN1)


Basic Information

Item Value
gene id CI01000050_02995539_03115563
gene name CABIN1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 2995539 ~ 3116078 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_02995539_03115563.mRNA
TCTTTGCATTTTTGTGTGGCCCGACTTTCAACAAATATATCAAGATTCAAGCTGCGCGTGCACGCACTCGTCCAATCGGAGCGCTCGACACTGACTTCAGCGACTCTCCTCAGAGCAGAAGATCATGCGTGCAGCTGATCCGTATCGCTGCACTGAATGCGGCGTCTCAGGCTGCGGATGAGCATGAAGACTCCTTCAGAAGCACTAAGCCAAGTCAAACAAAGGAAGCCCAGGAAGCGGAAGCGTTTGCGCTGTATCATAAAGCTCTTGATCTGCAGAAACATGACAAGATTGACGAGTCTGCCAAAGCCTACCATGAGCTCCTCAAGACCCCACTGCTCAAGGAGGCAGTGGCATCTGAAGATGAGAAAGTAGGACTGAAGCATCCTGGGCTGATGTTGAAGTACTCCACCTATAAAAACCTGGCCAGTCTTGCTGTGCTCAGAGATGATCTAGACACTGCCATGGACTTCTATGTAAAAGCTGTCATGCTGGACTCCACAGATGTGAATATGTGGTTTAAAATGGGAAAGTTGGCCTTGAGGAAGGCCAGCATGCCTTTGGCCCGCCATGCCTTTGAGGTGGGCCTGCGCTGTAACCCGGATCACTGGCCCTGCCTGGACAGTCTCATCACAGTCCTCTACGCTCTCAGTGACTACAGCTGTTGTTTGTACTACATCTGTAAGGCTCTGGAGAAGGACACAGGCTACAGTAAGGGGCGAGTGCTCAAAGAGAAGATCTTTGAAGAGCAGCCCTGCCTCAGACGAGACTCTATGAAGATGTTCTCCAAACTTGATGTGTCAGTGCAGTATGTGGATGTAGATGAGGATGAAGCCCACAGCATTGTAGAGGAAGCACTGGAACTGAGGAGACAGAGACAGGCTAAACTCACACGGCACCCGGTAGCTGACCTGCAGCTGGTTCAGCCCATCAAATACTTCACGTGGAAGAGTGTGGGCGAGAGTTTCTTGGCCATGTACAAACACCAGAACGCTTGCCTGGTCCCACGGCCTGACTTTGGCCGCCGAATTGATTTGTCAATGTACCGTGACCCGGACTGCCTCCTGCAAATGCCCACCAGCACTCCAGCGCCCGCTACTGTTGCTTCAGACCCTCCTCAGCCTCCCATGAACGTCAGTGTACCTCAGGCCCCCCCTGCCCCTCCTCCTGGTCCCAGCAGCCCAAGCTCCAGTCTACCCCCATCCACCGAGCTGCTTATCCAGCCGCAGGCCGAGCCCATCACTCCTGGAGGAGTACCGCAGAGCCAGAACATCATTGAGATCAGCACAACCACAGTCACCACTACTGCTGCCAATGGAGCTGAGGATGCTGCCGTCACCATGGTTACTACTGCTGCTCTGGACGCTGCCATGAGTGATAAAATGAAAAAAGGCACCAAGAGAAAACGTGTGGTAGAGGACAACGTAGAGACGGCAAAGAGACGCTCTGCACGTGTCCGCAACACCAAATGCAAGAAAGAAGAGAAGATTGACTTTCAAGAGCTCCTGATCAAATTCCTCCCCTCTAGGCTGAAAAAGTTTGAAGATGATGAAGATGAGGAGAGTCTCAGTAACATGGACTCTCATTGTGACGTCAAACCTGATTCCCAGTTGAACCGAGGCTCCGGATCCAACTCCTCTGAGTATATCATCTCTATGGAGTCAGAGCGCAAGGATGTGCATGCCTTCCTGCTGGCGAACATGCAGAACGGCGGCATCCTGGAGCTGATGATGCGGTTTCTGAAGGCGGTGGGGCGGATGTTTCTGGAGGAGTGGCCAGCGGGCCTCGGTGGAGTGGTGCTGGATCTCTTCACCTACTGGAGGAAACACAGCGCTGGGCTACCCAACCCACTGCTCAGAGATTCCAGCAACCAGCACATAAAGGAAATGATGCTGATGAGCCTCTGCTGTCTGGAGCTGCAGTTGGAACAGAAGTCTATGATGAAGGGCAGGAACATGTCTCAGAGGAAGAACATGTCAGCTTCAGGAAGGGATTGTGGGGACGTGGATGGACCAGAGACCCGCTTTCAGTCGGATATATTCCTCCTGACCATGGCCTCGTCTCAGAGAGATCTGTTTGGAGACGACTGGCTCTCTTTTGCCGGTGACATGGAGGAGGCGCTGGAGTGTTACGACATGTGTGTCGGTCTGCTTAAATGTCAGACAAATGAGATGGAAAAGATCACCATCCTCCTGCCCAACCTCAGCATGGACAATGCCATCTCTTTAGAGGAGATTGAGAAGAAGTTGAAGTCTCTGGAGCGATGTCAGTCTTTAGAGGAGATCCAGAGACTGTTTGACACGGGAGACTACCAGTCTGTGGTGCGTTTACTGCAGCCCACACTGAGCTTTGGCCACGGCTCGGCGCGACTGAAGCCTCTAGATTACATCAGCTCTGCCCCTGAGAGACCAGCACAGCTGCTACTGCTGCAGAGTTCCCTGCTGCGACTGAAAGACTTCAGCACCTGCTTTGAGACAACTGAAGTGTCTCTCAATGAGGCCATGCAGCACTTAAACTCCACATTACCCAGCAGCCCCTCTGCCAAGGAGGAGTGGGTTTCCACCATCACGGCCCTGCTGAAGGGCATCGAAAGCTGCATCGCTGACAAGCCTGAGCTGCTGTGTCACAGCCCGCGCTCCACAAACCTGCCGCGCCTCGCCAACAACCTCATACAGTTGATAGCCAACAGCATGGTCTTACCTGATGACCCCAAAGAGGCTCATTTCTCATCACTGTTGCCATGGATTCTGCTGTACCACCTCATCAAACAGGAGGAGGCAGCGTTTGACTGCATGCTGCGGCAGCACATCACAGACGAGGATGACGATGAGGATGACACTCCACTGCTGCCCTCCTCCCTCATGCTTCTGAACACAGCACATGAATGCCTGGGCCGTCGGTCCTGGTGCTGCAACTCTGATGGCACTCTGCTCAAATTTTTTGTGCGTGTACTGCGGGAGAAGCTCTCAGGACAGGAGAATCTGCCATATAAAGAGGATCTGGAGACGGCACTGGAGCAGTGTTTCTTCTGCCTGTACGCTTACCCCAGCAAGAAGAGCAAAGCCCGATACCTGGAGGAGCATTCTGCCCCACAGAGAATACATGTAACGGCCAAAATGCGGCGTAATTACAGATACATTAGACCTACTTTTCAGAATCAGTATCAGTGTAGTCGAATAGTTCTGATAATGAAAAAAATCTCAGTGTGGAGGATATTATTTCATGCCTGCCGTTGTGTTCAGATTACTGTTATTCTTGTGGGGGACAAAAAGAGCTCTAACTCACAGATTAACAGAAATTCATGTCCCCCATTTCCACTGTTAAAACTCTCCATTCATCCCAAAACCTTGCCAGAGTTCGACAGCTATAAGACCAGCACCGTCTCTGCTGACCTTGCCAACCTGCTTAAAAGGCTTTCTGGAATAATCCCACACAATGATGGCCCCACACTCTCTGTAGACGATGTCTCTGCCTATATTGAGGGAGGTGCTGTCAAGCATTTCTCTTTGTCCAAGGTGCCAGCACTTCCAGAAGGAGCTTCCCCGGCACCCCCTGTGGTTAATGAGCTGTACTACCTGCTGGCGGACTACCACTTCAAAAACAAAGAGCAGTCTAAAGCCATCAAGTTCTACATGCACGACATCTGCATGTGTCCCAACAGGTTTGACTCATGGGCAGGCATGGCTCTGGCACGCGCCAGTCGTATCCAGGACAAGTTGAACTCTAATGAGCTCAGGAGTGACGGACCCATCTGGAAAAACTCTCTGGCTGTGCTGACCTGTTTCAAGCGGGCTCTGGAGATAGACGGCTCCAACCTCTCCCTATGGATCGAGTATGGAACCATGTCCTATGCCTTGCACTCCTTTGCTTCCAGACAGCTCAAACAGTGGAAACGCGAACTTCCCCTGGACTTGATCAAACAGATGGAAGAGCGCAGAGACTCGATGTTGGAGACGGCGTCGCAGTGCTTTCAGAGCGCCTCTCGCTGTGACGGCGATGAGGAGGAGTGGCTCATTCACTACATGCTGGGAAAGATTGCAGAGAAGCGCAAATTGCCACCCAAAGACTACCTGCAGCTGTTCAAAAAGTCAGACACATCTCACTACAGCCCTTGTGTCATATTTTTCCAGTCTGCACACTACCTGCACGAGGAGGCAGCCCGATACCCGCGCAAAATCCACTACCACAACCCGCCTGACCTCGCCATGGAGGCCTTAGAGCTGTTTTTCCGCCTGAGCGCCACAATTCTGAAGTTGCTGGAAAATGAGGAAGATGATGGTGAACAGTCTGAGCAGCAGATGAAGCTCCTGGATTACGATCTGTTCTTCAGCATGCTCGCCGAAGCTGCCGTCGGACCCTTTGCACGTGGAGAGGAGAAGACCACACCCAAAACCAGCAGCGACAAGGAAAAGCTTCCATCCATTAACGATGAAGACTCACGCTCTTCGGTTGGCGTGAGTACCTGTCCGGCAGCATTGACCACCTCATCTGTCACATCTGTGGTGGCTGCAGCAACTTCTTTGCCTGGCGACGGTGCGGCAGGTGCGAGTTCTCCCACGTACGCGGTCACTCCGGTCGACCACGATTACGTCAAACATGATGGCTTTGACCTAGTTGCTAAAGTCAGTCTCAGCTTGGTGTGCTCATTTGCTGGAATACAGTTCATAGATTTAGTCACTCGCTTCAGTATGAAGCTGACTTCTCACATGACCATGACTACTGCGTGTGTCTCTCTGCTTTGCGGCCAGGATCTGCGTATGTGTTGGCCTATAGCTGCTAATATGCTCTGCAGGAAGCTGCAATTTTGGGCTGACGCAGCGCCATTTTTCCCCTTCACGCTGAGTGTGCGGGTGCGTTGGCGTTCTCTGGAGGAGGGGAGCTCCTTGCAGGATGTCTTCATGGACCCCACCAGCTCACAGGACAGCAGCCACAAGGTCGATACTGGCAAGTGTAGTATTTTTCCGGAAGAATCAAATGCCATTGAAAAAGAGAAACGGGCCACAGTAGAGGACAATCTAGGCACCTTGGAGGACAAGAACATGGACATCAGCTCTGCCACACTGTCTCAAGAATCTTCTGTCACACAAGAGTCTTCAGACACCACCTTATCCATCACCTCCCCTGAGGCCTCCGTCCCGAAAACTCCTACCACAGACACCCCGACCCAGGCTCCATCTCTGCCGCCGCACACGGCCCAACCTCACAAACCCCACTCCCAGACGGGCTCCTCCAGCGAGGGGAAGCGCAGACCAGAGCCGCCGCCTCCCCTGGAAGTGATAGAGTTGCCCAAGTGTCTGCCGACGGGACGGGGAGAACAGAGGAAAACACTAGTGGACGTGTGTGTGAGGTCTCTCTTCCTGTGTCTGAGTCGCTTCCCACAGCATTACAAGAGTCTGTACCGTCTGGCCCACCTGTACGCCTACAGCAAGACACACAAGAACCTGCAATGGGCACGAGATGTGTTGCTAGGGAGCAGTGTCCCATGGCAACAGCTGAAGCACATGCCGGCACAAGGACTTTTCTGCGAGAGGAATAAGACCAATCTGTTCAACCCAGATACAGTTCACACGACTGGAGGGAAAGATGAACAGCTCGAGATGAAGCAGAGGGTTAGAGAGATGGATCGAGAGAGAGGCATCTGGCGTATTCCAGTAGATGAGATCGATCGTCCGGGTAGTTTTGCATCTCATATGAACAGATCCATCGTGCTGTTGCTGGATGTTCTGTCTCAACTGAAAGATCACCACACGTTACTCAAAATCTCCCTCATGCTTCAGAGAACCCCCGACCAGGGAAAGAAGTACTTACGAGATGTGGACCGACAACTTTTGGCCAAGCGAGCGTTTTTCTTCACTGTAAAAGTGCTGGAAGACAATCTGGATAAACTCACAGGGGTAAGTGATCCCCCTAAACCGTCTACCGCCTCTATGGGTGAAATGACCACAGTGGATGCGTCCAATCGGCCTCCAGTTGCAGAGGACACCAAATGCTCCCACACTAGCCAGCCTAAAGCAGGACTCCCCGATACCCCTACGGTCACAGGAAGTGAGACTGGACCTCCTGGCATGCCTCAACAACATTCTGCCACACTTCAGCTCTCCCTGGAGCCTTTGACTCAGGTGACAGCGGTCACCGTTCACCCCAGAGAAGGAACTTCAGGACTTGGAGAGCCTATGGAGCTTGGCTCGGGATCATGGCCCAGTGCCTCAAAATTCAGAGACCCTCAAACGCCGGTTGACACTGGCCCACAAGAGCAGGTTAAATCAGTAACGGAGGAGGCCGATAAGGTCCCAGAGAGCAGTCGGGCGACGGAGCTGTCGCTGGAGGAGTTGAGCATTAGCTCTAAACAGCAGCAGCTACAGAATCAGGTGAACGCAGCTAAAGGAGCGCTAACTATGGCCACAACACCAACGTCAAGCACACCTTTACCTAGCAGCCCTGAGCTGGCGCTACCGCAGAGACCCAACAGGAAGAGGAAACTGCTGGATGACGTGGAGTCAGGCAAGACGCTGCTTCTGGATGCGTACAGGGTGTGGCAGCAAGGTCAGAAGGGCATGACCTACGACTTGCAGCGCATCGAGAAGATCATGTCGGAGACCTACATGCTGATTAAACAGGTGGATGAGGATGTAGCGCTGGATCAAGCTGTGAAGTTCTGCCAGATTCAAATGGCGACGTCGGCACAAAGACAGAACTCCAGTGATGCGCCCACCACTCCCAAGTTTAGTAAAGACCAGCGAGACATCTTCTTCCCAGCATCATTCTCCACGCCGTGCCTCCACACGCACACATACTCAGCATCAACGCAGGACGGGGAGGCCAAGCTGAGCAAGACCCCTCGGCCACTTCTCATACAGCCACAGACACACAGCACTCCAACACAGATCTACTGCCCGCCCTCCAGCCAACCCGACCAATCGCAGCAGCGGAAGACGCCCAGCCAACCAATAGCAAGCATGGCCTTCTTGCCCCACACAGAGGACCGAGAGGAGGCCGCCTCTGAGGGTCTGCTGTACCGCCAGCACGAGTCGCACCTGTGTCAGCAGATGAAGATGGCCAGCGTCTCTCAGATTCACAGCACACAGGAGTGGGCCGGTCATGAGCCGCCGTCCTGCTCCACACACACCAGCACAGAAAGTGACCAGTCGAAGCAGGGTGATGCCAGTCGCATCCGGTCCAGGATTCCACCCAACATGCCCAAACTGGTGATTCCCTCCACAGTCACTAAATTCCCCCCAGAGATCACAGTCACGCCCCCCACGCCCACCCTGCTCTCGCCGAAAGGTAGCATCTCTGAGGAGACCAAACAGAAACTCAAGAATGTGATCCTGTCCTCTCAGTCGGCAGCTAACGTGAAGAAAGACACTCTCGCTCAGCCTGCTTTAGAGGTGCAAGAGACGTCGAGTCAGGAATCCTCCCTGGAGAGCGAGTCCGATGAGGAAGATGACTACATGGACATTTGATCCGTACAGCTTTGACCCGCACTGCTGCAGAACTCGAGCTGAACTTTGAAGTGAAATCTCCTTTTTTTTTAATTGTGTAGCTGCAGCTAATCGTTGACGGTTTCGTCTGCGTCCGTTTTTCTATAGCGCGTGTTCTCCGCTGTATGCACGTTTTTCAGCGAAAGGGCTTTTTCCTACCCTTGGCACTTGTGTCCTGTTGTTTTTGCTCCTCTGCTGCTAAGCATGGACTGGGTTTTTCTGTTGTTTTTTCGTTGTGTACAATCTTGCAAAGTGCCATTTTTACTCCAGCAGTTACAAAAACCACGCTCACAGCTAACCGCAACCACCACCACGCTGGATTCATGGAAAATCAGTAAAAAATGTTCTACTTAAGGATGGATTGTGTAATACTGGCAGTTTGTGTAATGCAGTTTACTCTCTCAGAGTTTCTTGGGCATTAAATCCATCACGACGTTGTTTACAGATTTAACAGGAAGTACGTTTTGCTTGATGTTTGCTCAGCTTAGCAGTGTAAA

Function

symbol description
cabin1 Predicted to contribute to nucleosome binding activity. Predicted to be involved in DNA replication-independent nucleosome assembly. Predicted to be active in nucleus. Is expressed in integument; nervous system; optic cup; and pharyngeal arch. Human ortholog(s) of this gene implicated in ovarian carcinoma. Orthologous to human CABIN1 (calcineurin binding protein 1).

GO:

id name namespace
GO:0031491 nucleosome binding molecular_function

KEGG:

id description
K17613 CABIN1; calcineurin-binding protein cabin-1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_02995539_03115563.mRNA True 7978 mRNA 0.52 44 2995539 3116078

Neighbor

gene id symbol gene type direction distance location
CI01000050_02978801_02980782 CEP78 coding upstream 14757 2978801 ~ 2980782 (+)
CI01000050_02878198_02942065 VPS13A coding upstream 52804 2878198 ~ 2942735 (+)
CI01000050_02852118_02864754 RNF122 coding upstream 130642 2852118 ~ 2865822 (+)
CI01000050_02833976_02838912 NA coding upstream 156055 2833888 ~ 2839484 (+)
CI01000050_02814263_02825948 POLR3D coding upstream 169386 2814263 ~ 2826153 (+)
CI01000050_03129712_03134758 TBX16 coding downstream 13634 3129712 ~ 3134963 (+)
CI01000050_03224108_03230670 NA coding downstream 107979 3224057 ~ 3231161 (+)
CI01000050_03238081_03239214 NPY8BR coding downstream 121639 3237717 ~ 3239314 (+)
CI01000050_03272821_03284544 KCTD9, KCTD9A coding downstream 156141 3272219 ~ 3284762 (+)
CI01000050_03306831_03324064 NA coding downstream 190753 3306831 ~ 3324244 (+)
G212973 NA non-coding upstream 865 2994385 ~ 2994674 (+)
G212970 NA non-coding upstream 18103 2977209 ~ 2977436 (+)
G212969 NA non-coding upstream 29460 2963201 ~ 2966079 (+)
G212950 NA non-coding upstream 124376 2870899 ~ 2871163 (+)
G212948 NA non-coding upstream 126744 2868565 ~ 2868795 (+)
G212980 NA non-coding downstream 42048 3158126 ~ 3158455 (+)
G212985 NA non-coding downstream 51689 3167767 ~ 3168197 (+)
G212986 NA non-coding downstream 56546 3172624 ~ 3172954 (+)
G212988 NA non-coding downstream 58626 3174704 ~ 3174999 (+)
G213000 NA non-coding downstream 74441 3190519 ~ 3190739 (+)
G212927 NA other upstream 220406 2774839 ~ 2775133 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 1298131 1691374 ~ 1698973 (+)
CI01000050_01296683_01297763 SELENOK other upstream 1695933 1296365 ~ 1298255 (+)
G212184 NA other upstream 2561333 433684 ~ 434206 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 689065 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 834524 3931890 ~ 3957044 (+)
G214717 NA other downstream 991504 4107582 ~ 4108280 (+)
CI01000050_04591548_04592778 NA other downstream 1475477 4589926 ~ 4593049 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 2291507 5407585 ~ 5409417 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036791 si:ch73-313l22.2 coding NC_007119.7 CM002892.2 51779734 ~ 51933662 (-)