CI01000050_02978801_02980782 (CEP78)


Basic Information

Item Value
gene id CI01000050_02978801_02980782
gene name CEP78
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 2978801 ~ 2980782 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_02978801_02980782.mRNA
GTGGCGTTGAGCGCAGATGGGCAGAAGGAGTTTCACGCGCAGAATGAGACGCGGCTGCGCTTTCAAACCGCCGCGGTTTGTTTTGACACGCTGGGACTGGGTTGCATGATGCTGGAGCCGGCACAGATCCGTCGGAGAGGCGCTCAGGACTTTGAGGGTTTCTATGATCATGTGTGTGCATCTCAAGGATCAGCTCCTGTCCGTGCGGTGAAGGCCAGCCTGAGTCGAGGGATGTTAGATTTTAACCCTGATCCCATCAGTCTAGCGGACTGGACGCCCATACTGTCAGCCCTGGCCATCAACAAACACCTCCAGCATGTCGCCATCAAGAGCTCTTACCTCACCAGCACTGGAGCTCAAAGTTCGTACAAGGCTCATAATAAGAAGAAGACTCCTGTGATTCATTTCAAGAATATGACGCTTCAATTGTGTAAGGCTGTGCAGAAGTGCCTGTGTGAGTCCAGCAGCCTAAAGACTCTTCATCTGCACGGTTTGCCATTGAGAGAGAGGGACCTCACCGCACTCACAAAG

Function

symbol description
cep78 Predicted to be active in centrosome. Orthologous to human CEP78 (centrosomal protein 78).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_02978801_02980782.mRNA True 531 mRNA 0.53 3 2978801 2980782

Neighbor

gene id symbol gene type direction distance location
CI01000050_02878198_02942065 VPS13A coding upstream 36066 2878198 ~ 2942735 (+)
CI01000050_02852118_02864754 RNF122 coding upstream 113904 2852118 ~ 2865822 (+)
CI01000050_02833976_02838912 NA coding upstream 139317 2833888 ~ 2839484 (+)
CI01000050_02814263_02825948 POLR3D coding upstream 152648 2814263 ~ 2826153 (+)
CI01000050_02778979_02781848 NA coding upstream 196156 2778979 ~ 2782645 (+)
CI01000050_02995539_03115563 CABIN1 coding downstream 14757 2995539 ~ 3116078 (+)
CI01000050_03129712_03134758 TBX16 coding downstream 148930 3129712 ~ 3134963 (+)
CI01000050_03224108_03230670 NA coding downstream 243275 3224057 ~ 3231161 (+)
CI01000050_03238081_03239214 NPY8BR coding downstream 256935 3237717 ~ 3239314 (+)
CI01000050_03272821_03284544 KCTD9, KCTD9A coding downstream 291437 3272219 ~ 3284762 (+)
G212970 NA non-coding upstream 1365 2977209 ~ 2977436 (+)
G212969 NA non-coding upstream 12722 2963201 ~ 2966079 (+)
G212950 NA non-coding upstream 107638 2870899 ~ 2871163 (+)
G212948 NA non-coding upstream 110006 2868565 ~ 2868795 (+)
G212943 NA non-coding upstream 147806 2829560 ~ 2830995 (+)
G212973 NA non-coding downstream 13603 2994385 ~ 2994674 (+)
G212980 NA non-coding downstream 177344 3158126 ~ 3158455 (+)
G212985 NA non-coding downstream 186985 3167767 ~ 3168197 (+)
G212986 NA non-coding downstream 191842 3172624 ~ 3172954 (+)
G212988 NA non-coding downstream 193922 3174704 ~ 3174999 (+)
G212927 NA other upstream 203668 2774839 ~ 2775133 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 1281393 1691374 ~ 1698973 (+)
CI01000050_01296683_01297763 SELENOK other upstream 1679195 1296365 ~ 1298255 (+)
G212184 NA other upstream 2544595 433684 ~ 434206 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 824361 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 969820 3931890 ~ 3957044 (+)
G214717 NA other downstream 1126800 4107582 ~ 4108280 (+)
CI01000050_04591548_04592778 NA other downstream 1610773 4589926 ~ 4593049 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 2426803 5407585 ~ 5409417 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036792 cep78 coding NC_007119.7 CM002892.2 51933983 ~ 51954598 (-)