XLOC_036792 (cep78)


Basic Information

Item Value
gene id XLOC_036792
gene name cep78
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 51933983 ~ 51954598 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071833
CAGCAGATGGCGATAAGCGCATGCGCACAGATGCAGTTTCACCCGCAGAAAGAGACGCTGCGTCGCTTTCAAACCGCCGcggtttgttttggttttgacGCGCTCGGCTGGGAGGGAGGATTTGATTATTTATCGGTCTCTAGAGTAGAAACCACGACAACATCCATAACAAAACAGGCTTCGTGATGCTGGAACCGGCACAGAGCCGCCGGCGAGGCGCTCAGGATTTTGAAGGCTACTATGATCATCTGTGTGCGGCTCAGGGTTCAGCTCCTGTCCGAGCGGTGAAAGCCTGCCTGAGTCGAGGAGTGCTAGAGTTTAACCCGGATCAGCTCAGCCTGGCAGACTGGACTCCTGTACTGTCAGCCCTGGCCATCAACAAACACCTCCATCAGGTCTCCATCAGGAGCTGCCACCTCCTCAGCACCGGAGCACAGAATGTTTACAGGCCTCATAATAAGAAGAAAACCCCTGCGATTCATTCCAAGACTGTGAGTCTTCAGTTGTGTAAGGCTGTGCAGAAGTGTCTGTGTGAGTCCAGCAGTCTGAGAACGCTTCAGCTGCACGCTCTGCCgttgagagagagagatctcACGGCGCTCACAAAGGGTTTAGCTAAGAGTGTGTCATTGGAGCATCTTTCTTTAGCACACTGTCCAATCGGAGATCAAGGTTTGGAAGTCATTTGTCAGAGTGTGAAATATTCATCAACAATTAAAGGAGTGGATTTCACTTCCTGTAATATTACCTGGCAAGGAGCAGAACACATGGCGAACATCATAAAGCACCAGGCGATGCGGCGTCACAGTACAGCTTGGGTGGAGACTCTGCGCTACAGGAGGGCGGAGTTTGAAGCCATGAACGGACTGCGCAGAATCACTCTTAATGACAACATTCTCATTGGAGACCGAGGGGTTTCGGCTCTTGCTCGGGAACTCACAGAAGACCTGTGGGTCAAAGCAGTAGACCTGCAGCGCTGTGGAATTTCTAATGACGGAGCTCAAGTTCTAGAGCAGATGCTGCAGTCCAATTCAACTCTATGTGTGCTTGACATCAGGAGAAACCCACTGATTGATAACAACGTGGTAAAAGCTGTGCTTAAAAAAGTCCTCATGAACACGAAAAACCTCGACTCACAGTATCTTTGGCTTAAGCCTCCATCTCCTAAAGACAGTGCTGATCAGTCACGGCAGTTTCGGAGGAAGAACGCAGGAAAAGCTACGTATCGAATTGGATCTCGCAGATCGTCTTCTGTAATTTCAGTATTTAGGCCTCCTCGGCCCGGGTCAACGGGATACATCCCATGGCGCACTGCTGCACGTGCCGACTTACAAAGAGGTGCATCGCGGGCTGATGGAAGAACAGACCAGAGTTTTCAAAATGCCACCTCTGTGCAGGTGACTGTAGAGACGGAGTCAGAATCTGAAGACGTGGAAGCTAAAGATGTAGAGAGTCCTCTGGAGAAAATCACAAGCTACCAGTTTAGGCGACTACAGACTGAGAACAACCGACTAAAGGTGGAGCTGGAAGAGTGTCGGCTGAGGCTGGCAGAGGAGCGAAACACCAGACTGAAGGCCAACTCTCGCCTGGTGGAGCTGGAGCTGGAGAACGAGCGTCTGCGCACTATGAATCAGTCTCTATCTGAAGCCCACATTAGCTCCTCTGTGCTGGAAGATGAACGTGTGCTGGAAAGCATCGAGTCCTCCTTCCACAAATTCCACGCTTTTCTAGACCTGCTGAAAGACGCCGGATTGGGTCAGTTTGCGTCTATGGCTGGAATTGAGCAGTCAGACTTTGGTGTTGTGGGTCGTCCTCAGCTCTCCTCAACAGAGAGGACACACACTGGCCCAGCGAGACATGAGGACAGGAGGAACAGTTCAGCTCCTGTTGACGTCCCTCATCCTGAATCAGGAACTCGTCCAGAACCTCCTGCTGACACTGAAGATCTCCCTCAGCCTCGTCCCCATCAGGAGGAGCTTCTGCATCCAGTAATCTCGAGTAGATCCTCTCCAGCTTTACAGGAGCTGGATCTGAGGGCTGGATCTGGCTCTGGAGGATCCGTCAGCAGCGTCAGTCTCCAGTCCAGAGGCTCTCCGTCCTCCAGATCTGTGTACTCTAGAGCCTCCAGTGTGTCTCGCTCTGGTTCAGACAGACCGAGTGCGTCTGGAAGCCAGAGAAACACTGCTGGATTAATCGGGTTTTGAGGTAGTTTAGCTTCAGAGATCTTAATtaaaaaagggatagttcaccccaaaaataaattctctcatcattttctcatcatacacttgttctaaacctgattgggtgtctttcttctgttgaacacaaatttttatttatttatttatttcacaacaagggacagtgtacatttatcattattttcatcaacatttatcatttatcggtttagcttagcttagcataaatcattgaatcagattagaccattagcgtttcaaaaaaaaaaaaaaaaagagtaataatCAAGTAACTTTACtgccatggctgcagcaggtgcaatgataatACACAGCGCTTGAATAAAGCCCCCAGCTATGTGAAAtcgctgtgtaatatcattgcgcctgctacagccatggtacagcagcattattacttgattattacgccagaattaAACTATAGTTTCTAGTCATATCAGCCTAGAtaatagcaactttttatttaCCTTGGGTCatagtgtaaaatgtaaatacagaagagtcaagctttaaatagaaaaattatggaaattcttgattttttgagtgagatgctaatggtctaatccgattcaattgactatgctaagctaaagtgctcccgccagacacCGGctatccaggaccgagtttggagacccctgctttaagtgAAGAGTTGCTCATCTAAAGAGCTGCCGTCATCTTGATCTGTCCAGGGTTTATTACCTGTTAAAATCTATTAGGTGCTTCTTTGTTGACATCCCAGGATCAggatgttgtttatttacaaatgttaatgttatctgattgtatttatagtatttttgCTGTTCTTTGactttaaaggcacagttcaaccaaaaatgaaagtcagtggatgtttttgttttctagcattcttcaaaatatcttcttttgtgttcaacagtggaACAAGTGGTGAATGAGTAAATCACTATCATGTTAAGGTTATTAGGTTATTCTATGTGAATTTTAGCTTTGTAAATTTTAGCTGACTTGATTAATAATTGTGAAACACTTGTCTCAAGGTTTTTTAAAcgattttttatttgaaaataaatcagttttgtacATACCATGTGATGCTTTTAGTGCAATAATTGGTGTTTGTAGACTAAACATATGCTGGtattcattaattcaataatGCATGTGCAAAATTGATTTTGTCCACACTTAATacagtgaataattatttattattagttaaacTTTTAGAATGCCTTTTAAAAAAGGATGacaaattctttcatcatttttaCTCTTTTTAAAATGAACTCAATAATAGCAGTATTAGATATgctgtaacactttatttaaaaaaaaaatcacaaatgaatttgatcagtCTGATAATCTGAACAATCTGAGAAATGTGACAAAGTAGAAAAAGAGATCTTCCAGAAAACAACCTACGAGTTGCTTGCATTGTCTCCAGATGTTTTTTCTGATCAATAAAGGTCTTGGAAAGCACATCTAGTAAAAATCTGAAGGAAAATAAACGATGTATGAATGGCAAAGTAAGGGATTGAAAAGTCTGAAATGtgcagacaaaaaaagaaaaatataagtataaatgtttaatattgcATACATCGGATAATCTATTAATGTGATTgtgataaaaaatacataataatgtaataataatattaataaaagagttatgacaaataataataaatatagaaaatacaGCAATAGAAAAAACGAACACCTTATGATTAGAAATATAATTAGTATAATGTGTTggttaaatttgtatttataaacgtgttcattcatttttcttcggcttagtccctttatttatcaggggtcgccacagcggaatgaaccaccaactaatccagtataagttttacacagtagatgcccttttagccgctacccagtattgggaaacacccatacacacgcactattcaattcacctatagcgcatgtgtttggacacgGTGAGAACATCCACACTGGCTCAGCctggactcgaactagcgaccttcttgctgtgaggcgacagtgctaatcatgTATAcctttatttattacaaataaacattttgaatttagataaattacatttttgacaCGATTTTACAACTAGATGTTGAGTTCGTAAC
>TCONS_00071834
TTTCACCCGCAGAAAGAGACGCTGCGTCGCTTTCAAACCGCCGcggtttgttttgGGAGGATTTGATTATTTATCGGTCTCTAGAGTAGAAACCACGACAACATCCATAACAAAACAGGCTTCGTGATGCTGGAACCGGCACAGAGCCGCCGGCGAGGCGCTCAGGATTTTGAAGGCTACTATGATCATCTGTGTGCGGCTCAGGGTTCAGCTCCTGTCCGAGCGGTGAAAGCCTGCCTGAGTCGAGGAGTGCTAGAGTTTAACCCGGATCAGCTCAGCCTGGCAGACTGGACTCCTGTACTGTCAGCCCTGGCCATCAACAAACACCTCCATCAGGTCTCCATCAGGAGCTGCCACCTCCTCAGCACCGGAGCACAGAATGTTTACAGGCCTCATAATAAGAAGAAAACCCCTGCGATTCATTCCAAGACTGTGAGTCTTCAGTTGTGTAAGGCTGTGCAGAAGTGTCTGTGTGAGTCCAGCAGTCTGAGAACGCTTCAGCTGCACGCTCTGCCgttgagagagagagatctcACGGCGCTCACAAAGGGTTTAGCTAAGAGTGTGTCATTGGAGCATCTTTCTTTAGCACACTGTCCAATCGGAGATCAAGGTTTGGAAGTCATTTGTCAGAGTGTGAAATATTCATCAACAATTAAAGGAGTGGATTTCACTTCCTGTAATATTACCTGGCAAGGAGCAGAACACATGGCGAACATCATAAAGCACCAGGCGATGCGGCGTCACAGTACAGCTTGGGTGGAGACTCTGCGCTACAGGAGGGCGGAGTTTGAAGCCATGAACGGACTGCGCAGAATCACTCTTAATGACAACATTCTCATTGGAGACCGAGGGGTTTCGGCTCTTGCTCGGGAACTCACAGAAGACCTGTGGGTCAAAGCAGTAGACCTGCAGCGCTGTGGAATTTCTAATGACGGAGCTCAAGTTCTAGAGCAGATGCTGCAGTCCAATTCAACTCTATGTGTGCTTGACATCAGGAGAAACCCACTGATTGATAACAACGTGGTAAAAGCTGTGCTTAAAAAAGTCCTCATGAACACGAAAAACCTCGACTCACAGTATCTTTGGCTTAAGCCTCCATCTCCTAAAGACAGTGCTGATCAGTCACGGCAGTTTCGGAGGAAGAACGCAGGAAAAGCTACGTATCGAATTGGATCTCGCAGATCGTCTTCTGTAATTTCAGTATTTAGGCCTCCTCGGCCCGGGTCAACGGGATACATCCCATGGCGCACTGCTGCACGTGCCGACTTACAAAGAGGTGCATCGCGGGCTGATGGAAGAACAGACCAGAGTTTTCAAAATGCCACCTCTGTGCAGGTGACTGTAGAGACGGAGTCAGAATCTGAAGACGTGGAAGCTAAAGATGTAGAGAGTCCTCTGGAGAAAATCACAAGCTACCAGTTTAGGCGACTACAGACTGAGAACAACCGACTAAAGGTGGAGCTGGAAGAGTGTCGGCTGAGGCTGGCAGAGGAGCGAAACACCAGACTGAAGGCCAACTCTCGCCTGGTGGAGCTGGAGCTGGAGAACGAGCGTCTGCGCACTATGAATCAGTCTCTATCTGAAGCCCACATTAGCTCCTCTGTGCTGGAAGATGAACGTGTGCTGGAAAGCATCGAGTCCTCCTTCCACAAATTCCACGCTTTTCTAGACCTGCTGAAAGACGCCGGATTGGGTCAGTTTGCGTCTATGGCTGGAATTGAGCAGTCAGACTTTGGTGTTGTGGGTCGTCCTCAGCTCTCCTCAACAGAGAGGACACACACTGGCCCAGCGAGACATGAGGACAGGAGGAACAGTTCAGCTCCTGTTGACGTCCCTCATCCTGAATCAGGAACTCGTCCAGAACCTCCTGCTGACACTGAAGATCTCCCTCAGCCTCGTCCCCATCAGGAGGAGCTTCTGCATCCAGTAATCTCGAGTAGATCCTCTCCAGCTTTACAGGAGCTGGATCTGAGGGCTGGATCTGGCTCTGGAGGATCCGTCAGCAGCGTCAGTC

Function

symbol description
cep78 Predicted to be active in centrosome. Orthologous to human CEP78 (centrosomal protein 78).

GO:

id name namespace
GO:0005813 centrosome cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-070905-1 Predicted to be active in centrosome. Orthologous to human CEP78 (centrosomal protein 78).

Ensembl:

ensembl_id ENSDARG00000039229

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071833 False 4354 mRNA 0.42 16 51933983 51954598
TCONS_00071834 True 2017 mRNA 0.51 17 51936261 51954562

Neighbor

gene id symbol gene type direction distance location
XLOC_036791 si:ch73-313l22.2 coding downstream 321 51779734 ~ 51933662 (-)
XLOC_036790 tbx16 coding downstream 180379 51733907 ~ 51753604 (-)
XLOC_036789 npy8br coding downstream 298053 51634803 ~ 51635930 (-)
XLOC_036788 kctd9a coding downstream 334814 51586483 ~ 51599169 (-)
XLOC_036787 ankrd39 coding downstream 354697 51573124 ~ 51579286 (-)
XLOC_036793 NA coding upstream 32212 51986810 ~ 51988347 (-)
XLOC_036794 vps13a coding upstream 37746 51992344 ~ 52091696 (-)
XLOC_036795 tcf7l1b coding upstream 152220 52106818 ~ 52230115 (-)
XLOC_036796 NA coding upstream 343103 52297701 ~ 52310627 (-)
XLOC_036797 NA coding upstream 447059 52401657 ~ 52405146 (-)
XLOC_036781 NA non-coding downstream 721315 51212413 ~ 51212668 (-)
XLOC_036779 CR855300.2 non-coding downstream 906030 51027839 ~ 51027953 (-)
XLOC_036777 NA non-coding downstream 979739 50953658 ~ 50954244 (-)
XLOC_036776 FO704819.1 non-coding downstream 1035626 50889589 ~ 50898357 (-)
XLOC_036773 CABZ01060030.1 non-coding downstream 1416080 50517782 ~ 50517903 (-)
XLOC_036801 NA non-coding upstream 672909 52627507 ~ 52631484 (-)
XLOC_036805 NA non-coding upstream 923224 52877822 ~ 52882776 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_02978801_02980782 CEP78 coding CI01000050 null 2978801 ~ 2980782 (+)