XLOC_036788 (kctd9a)


Basic Information

Item Value
gene id XLOC_036788
gene name kctd9a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 51586483 ~ 51599169 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071825
ATGCGAAGGGTGACGCTTTTTGTCAACGGAACCTCCAAAAATGGCAAGGTTGTAGCTGTTTATGGGACTCTGTCTGATCTTTTGACACTCGCAAGCAATAAATTGGGATTAAGGGCTTGTAACTTGTATAATGGGAAAGGTGGTCTTATAGACGACATTGCCCTCATCAGaGATGATGATGTGCTGTATGTGTCAGAAGGAGACGCTTTCATTGATCCTCATAGTGAGGGCAAAATGTCAGATGACATCTCAGGATCGCacactgattggctgacgctGAATATTGGTGGGCGGCTTTTCACAACCACTAGGAGTACTCTTGTGAGTAAGGAGCCCGACAGCATGCTGGCACACATGTTTAGAGAGAAGGATGTTTGGGGCAATAAACAGGATGAACGTGGGGCTTTCCTCATTGACCGGAGCCCAGAGTACTTTGAGCCCATCCTCAATTACCTGAGACATGGTCAGATCATCATCAATGATGGAATAAACTTTCTacacaaattcaaaatattgttttgttttcagaatcaGTAA
>TCONS_00071826
GGGTACAATGTAGCTAGGTTGGTTCTTTCTACTCGCTCTACGTAGGTATTAGTTTAATACATAGATAAGTTAGTgagatattaatttattaatatttgtacagTTAATACAGTTTAATTAGTGTAAACAAAGCATGCGAAGGGTGACGCTTTTTGTCAACGGAACCTCCAAAAATGGCAAGGTTGTAGCTGTTTATGGGACTCTGTCTGATCTTTTGACACTCGCAAGCAATAAATTGGGATTAAGGGCTTGTAACTTGTATAATGGGAAAGGTGGTCTTATAGACGACATTGCCCTCATCAGaGATGATGATGTGCTGTATGTGTCAGAAGGAGACGCTTTCATTGATCCTCATAGTGAGGGCAAAATGTCAGATGACATCTCAGGATCGCacactgattggctgacgctGAATATTGGTGGGCGGCTTTTCACAACCACTAGGAGTACTCTTGTGAGTAAGGAGCCCGACAGCATGCTGGCACACATGTTTAGAGAGAAGGATGTTTGGGGCAATAAACAGGATGAACGTGGGGCTTTCCTCATTGACCGGAGCCCAGAGTACTTTGAGCCCATCCTCAATTACCTGAGACATGGTCAGATCATCATCAATGATGGAATAAACTTACTCGGTGTACTGGAAGAAGCTAGATTTTTTGGAATAGAGCAACTGGCAGAACAGCTGGAAGTCGCCATCAAGAATTCCCATCCACCTGAAGACCACTCTCCGCTCTCACGGAAGGAGTTTGTTCGGTTTCTGTTGGCTACTCCAACCAAATCAGAGCTACGCTGTCAGGGTCTTAATTTCAGTGGAGCGGATCTCTCTCGGCTGGATTTGCGCTATATTAATTTTAAGATGGCTAATCTGAGTCGCTGCAATCTCACCTATGCAAACCTGTGCTGCTCAAACCTAGAGAGAGCCGACCTGTCGGGAGCCAACCTGGATGGTGCTAATCTTCAGGGCGTGAAGATGCTCTGCTCCAATGCGGAGGGAGCGTCTCTTAAAGGATGTAACTTTGAGGATCCCTCTGGACTTAAAGCCAATTTAGAGGGGGCTAATCTGAAAGGAGTGGACATGGAGGGCAGTCAGATGACTGGGATAAATTTGCGTGTGGCTACGCTGAAGAATGCTAAGCTAAAGAACTGTAACCTGCGTGGTGCTACATTAGCCGGCACAGATCTAGAGAACTGCGATCTCTCAGGCTGTGATCTACAGGAAGCCAATCTGCGTGGTTCAAATGTGAAAGGAGCCATCTTTGAGGAGATGCTGACTCCGCTGCACATGTCTCAAAGCGTGAGATAACCACTTACTCTGCTCACCGCCCGGTAAAAGCCACCAGCCAGCTCCTCACAGCACTCTCTTACCCACAATCCTTTTCACGCTCCTGTGAAAACTTATGCAATACTAGCACTTGTTTTGCCA
>TCONS_00071827
GTTGGTTCTTTCTACTCGCTCTACGTAGGTATTAGTTTAATACATAGATAAGTTAGTgagatattaatttattaatatttgtacagTTAATACAGTTTAATTAGTGTAAACAAAGCATGCGAAGGGTGACGCTTTTTGTCAACGGAACCTCCAAAAATGGCAAGGTTGTAGCTGTTTATGGGACTCTGTCTGATCTTTTGACACTCGCAAGCAATAAATTGGGATTAAGGGCTTGTAACTTGTATAATGGGAAAGGTGGTCTTATAGACGACATTGCCCTCATCAGaGATGATGATGTGCTGTATGTGTCAGAAGGAGACGCTTTCATTGATCCTCATAGTGAGGGCAAAATGTCAGATGACATCTCAGGATCGCacactgattggctgacgctGAATATTGGTGGGCGGCTTTTCACAACCACTAGGAGTACTCTTGTGAGTAAGGAGCCCGACAGCATGCTGGCACACATGTTTAGAGAGAAGGATGTTTGGGGCAATAAACAGGATGAACGTGGGGCTTTCCTCATTGACCGGAGCCCAGAGTACTTTGAGCCCATCCTCAATTACCTGAGACATGGTCAGATCATCATCAATGATGGAATAAACTTACTCGAAGCTAGATTTTTTGGAATAGAGCAACTGGCAGAACAGCTGGAAGTCGCCATCAAGAATTCCCATCCACCTGAAGACCACTCTCCGCTCTCACGGAAGGAGTTTGTTCGGTTTCTGTTGGCTACTCCAACCAAATCAGAGCTACGCTGTCAGGGTCTTAATTTCAGTGGAGCGGATCTCTCTCGGCTGGATTTGCGCTATATTAATTTTAAGATGGCTAATCTGAGTCGCTGCAATCTCACCTATGCAAACCTGTGCTGCTCAAACCTAGAGAGAGCCGACCTGTCGGGAGCCAACCTGGATGGTGCTAATCTTCAGGGCGTGAAGATGCTCTGCTCCAATGCGGAGGGAGCGTCTCTTAAAGGATGTAACTTTGAGGATCCCTCTGGACTTAAAGCCAATTTAGAGGGGGCTAATCTGAAAGGAGTGGACATGGAGGGCAGTCAGATGACTGGGATAAATTTGCGTGTGGCTACGCTGAAGAATGCTAAGCTAAAGAACTGTAACCTGCGTGGTGCTACATTAGCCGGCACAGATCTAGAGAACTGCGATCTCTCAGGCTGTGATCTACAGGAAGCCAATCTGCGTGGTTCAAATGTGAAAGGAGCCATCTTTGAGGAGATGCTGACTCCGCTGCACATGTCTCAAAGCGTGAGATAACCACTTACTCTGCTCACCGCCCGGTAAAAGCCACCAGCCAGCTCCTCACAGCACTCTCTTACCCACAATCCTTTTCACGCTCCTGTGAAAACTTATGCAATACTAGCACTTGTTT

Function

symbol description
kctd9a Predicted to act upstream of or within intracellular signal transduction and protein homooligomerization. Orthologous to human KCTD9 (potassium channel tetramerization domain containing 9).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0051260 protein homooligomerization biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-147 Predicted to act upstream of or within intracellular signal transduction and protein homooligomerization. Orthologous to human KCTD9 (potassium channel tetramerization domain containing 9).

Ensembl:

ensembl_id ENSDARG00000021209

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071825 False 537 mRNA 0.44 7 51586483 51599036
TCONS_00071826 False 1423 mRNA 0.46 12 51586644 51599169
TCONS_00071827 True 1389 mRNA 0.46 12 51586649 51599152

Neighbor

gene id symbol gene type direction distance location
XLOC_036787 ankrd39 coding downstream 7197 51573124 ~ 51579286 (-)
XLOC_036786 fgfr1a coding downstream 62030 51430597 ~ 51524453 (-)
XLOC_036785 lgi3 coding downstream 181677 51375308 ~ 51404806 (-)
XLOC_036784 chmp7 coding downstream 219185 51350453 ~ 51367298 (-)
XLOC_036783 si:ch211-198o12.4 coding downstream 237052 51341612 ~ 51349431 (-)
XLOC_036789 npy8br coding upstream 35634 51634803 ~ 51635930 (-)
XLOC_036790 tbx16 coding upstream 134738 51733907 ~ 51753604 (-)
XLOC_036791 si:ch73-313l22.2 coding upstream 180565 51779734 ~ 51933662 (-)
XLOC_036792 cep78 coding upstream 334814 51933983 ~ 51954598 (-)
XLOC_036793 NA coding upstream 387641 51986810 ~ 51988347 (-)
XLOC_036781 NA non-coding downstream 373815 51212413 ~ 51212668 (-)
XLOC_036779 CR855300.2 non-coding downstream 558530 51027839 ~ 51027953 (-)
XLOC_036777 NA non-coding downstream 632239 50953658 ~ 50954244 (-)
XLOC_036776 FO704819.1 non-coding downstream 688126 50889589 ~ 50898357 (-)
XLOC_036773 CABZ01060030.1 non-coding downstream 1068580 50517782 ~ 50517903 (-)
XLOC_036796 NA non-coding upstream 698532 52297701 ~ 52310627 (-)
XLOC_036797 NA non-coding upstream 802488 52401657 ~ 52405146 (-)
XLOC_036801 NA non-coding upstream 1028338 52627507 ~ 52631484 (-)
XLOC_036805 NA non-coding upstream 1278653 52877822 ~ 52882776 (-)

Expression


Co-expression Network