XLOC_036784 (chmp7)


Basic Information

Item Value
gene id XLOC_036784
gene name chmp7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 51350453 ~ 51367298 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071814
TATTTACTTACAGACTGAATGCATGCGctttttagtttttctgcaacGATATATagtgcgatatgaatacaatttgacCAGATAGTCTTAATATTGCTattttgaaaagaaatcttgAATTTAGATGCATTTAGCTAAAGATAGTGAGACCCCATCTGATTGCTTAAGTTTAAATAAACAAcctatgcataaaataaatgcattttttttacaccTCAGATacgtacactcactggccactttattaggtacaccttactagtaccggattggaccccttttgccttcagaactgccgtaATCCTTCATggcttagattcaacaaggtactgtaaatattcctcagagattttgctccatattgagatgatagcgtcacagagttgctgcagatttgtcggctgcacatccatgatgtgaatctcccatttcaccacatcccaaaggtgctctattggatttagatctggtgactgtggaggccatttgagtacagtgaactcattgtcatgtttatgaaaccagtctgagatgattcacgctttatgacatggcaggttatcctgctggaaatagcctaaatccccattctgatgctcgatttgaactgcagaagGTCGTCCTGACcttgtctacatgcataaatgcattgagttactgccatgtgattggctgattagaaagttgcgttggacaggtgtacctaataaagtggccggtgagtgtatagtgcGTATGCTATTATTGTGATAGTGATAATTCTGTGATATATTGTGCTTTTTGATCACTAAAGTGTTTTAGTTGTCCTTGAAGTAATCATCCAAACTCTGGTTCGCAGCACAATGTCAGTTTCGGTGGAAAAGAGGAGCGGGTGGTTTCCTCCAGACTGGGATGACGACGAACGGATGTCTTTCTTATTCTCGGCCTTTAAAGAGAACCGAGATGTGGACTGCACCGACTGGGATGGGAAGATCGACTTCTGGAGCCCGCTGATCATCGAGCACTGCAGGAGATGCGGATCTGTGTGTGTTAATCTGCAGGATCTGAATGAAAATTTCAGAAGAAAGGGCTCAGTTCCTCTGGGCTTGAGTACTGTCATCCAGAGCATGATCAGGAGTGGGAAGGTACAGAAGGAATCCGACTTTGCTGCAAACGTGGACTCGGGCTGGCTGTCGTGGGGTGTTGGACTCTTGTTAGTCCGGCCTCTGAAATGGACCCTGTCGGCTCTGCTGGGCAGTGGGAGAGTCCCGCTGGAGGAGTCCTTCGTTGTCATCGAACTAGTCAAAGAAAAGGCTGCAGAGCTTTTAGCGGCATATCGGGGCTCTGCTTTATCAGCGCGCTCTCTGCTGTCTTTCCAAGAGCTGCGTTCTCTCTCGTCTCACATCTGTCCTGACGAAAGCACACTCTGCATGGCTCTGCTGCAGCTCCAGAGAGAGAAACACGTCACCGTCTCGCTCCACGAAGGAGAGAAGCTGGTGAAATTCAGTCAGGCGGGACAGGGCCGCGTGTCTCCTGTGAGCGAGGTGGACTTGGGAATCTACCAGCTCCAGTGCAGCGAGAAGCTTCTGGAGGAGCGCGTGGAGGCTCTGGGACACGAGGCCGAAAAGTGCAAGCAGCAGGCAAAATCGCTGCTTAAAGAGGGGAAGAAATCACAGGCCCTGAGGTGTTTACGTGGGAGCAAACGGGTGGAGAAGAAAGCGGATCGTCTGTTTGCTCAGCTTGAAACAGTGAAGGGGATCCTGGACAGAATAGCAAACTCCCAGACCGACCGCCTGGTGATGCAGGCATACCAGGCAGGTGTGGCGGCTCTGAGAATCTCACTGAAGGGTGTGACTGTGGAGCGAGCAGAAAACCTGGTTGATCAGATACAGGAGCTGTGCGACACTCAGGATGAAGTAAACCAGACTCTGGCCAGTGGGGCGCCGGATGCTGGAGAGGATTCGGAGGACTTGGAAGAGGAGCTGAAGTCATTAATGGAGAAAAGTGTCCCAGAAAACGATCTGTTCCCAGCAGTCCCGACACACCCCATTACTCCTCCGAGGAAAACGGATCTCCCAGATGCTGCTTTTGTCCAGTTTCTGCCCTCTGTGCCTAATCCTGGTATGAACATCACAGACGAGGAGCTGGACAGGGAACTACGTCGACTTACAGTCTCGGATAAAGGTTTGCCAAGAGAAAGCGTTTCGCCTCAGAGGAGACTTGAACCTGCGCAGTGATCATTTCAGCACAAGAAAGCACTTAAATGGGTTAATCGTTGTCCACGAAAGAAAGCCATCAGATAACGTACAGTACATGTGTGTCTATCGAGTCCTCATGACAAGCCCTTATTCATGTTTGTAATGTTCATCTTTGTTTTTAAAGAACGTTTTAAGAGTGGCCTTTTTGAGTTTGTAAAGTCTGTACAATGTATTATTCTAATAAAACCACAAATTATGATGCCAAATACAGAAAGTGCTGTGCGCATTATTCACTCAGATACTGTGTGTGTTCTGGTCTgaagtagatttttttaaagggccatgaagccccctcgtttcagcagggtgttttcacacctctactttggaaaaattaaggaaagtgggcgtgtccagctctgtttaggggggagtgtcggaggagcaaaagagggaggGTCTGTAAAAATTAGCATAAAAAGGGGAGTgtctgtcacaaaatgcggtgaaaatcctacaggACGGTAAGattgattgtggtgctaacacttttacactctgtgtaatagtttgatacgaactaactttgccatctgaataaacaaagagcactggtcgctcacttaccaaatctgtagagacggaacaatcaacaccaactggagccgcgtctttattaagaggagacgagcagcaaatccggatcttaCCATgtgcagatgagaaaagctcgGTTTGAATTTAGTCTTACCTATGCATTAATTCAGGagactcagagacgtaataaggc
>TCONS_00071815
gaagaaagacGGAGGTTTACTCGTCTTTTTCTATACTGCAGATCATATAAACATTATGTGGATCCCTGCTGATGGATGTCAGGACATTTACTGAGGAGATTTTAGCTGAGGACTTCATCCTGCTGCTTCAGCTTGAGCACAATGTCAGTTTCGGTGGAAAAGAGGAGCGGGTGGTTTCCTCCAGACTGGGATGACGACGAACGGATGTCTTTCTTATTCTCGGCCTTTAAAGAGAACCGAGATGTGGACTGCACCGACTGGGATGGGAAGATCGACTTCTGGAGCCCGCTGATCATCGAGCACTGCAGGAGATGCGGATCTGTGTGTGTTAATCTGCAGGATCTGAATGAAAATTTCAGAAGAAAGGGCTCAGTTCCTCTGGGCTTGAGTACTGTCATCCAGAGCATGATCAGGAGTGGGAAGGTACAGAAGGAATCCGACTTTGCTGCAAACGTGGACTCGGGCTGGCTGTCGTGGGGTGTTGGACTCTTGTTAGTCCGGCCTCTGAAATGGACCCTGTCGGCTCTGCTGGGCAGTGGGAGAGTCCCGCTGGAGGAGTCCTTCGTTGTCATCGAACTAGTCAAAGAAAAGGCTGCAGAGCTTTTAGCGGCATATCGGGGCTCTGCTTTATCAGCGCGCTCTCTGCTGTCTTTCCAAGAGCTGCGTTCTCTCTCGTCTCACATCTGTCCTGACGAAAGCACACTCTGCATGGCTCTGCTGCAGCTCCAGAGAGAGAAACACGTCACCGTCTCGCTCCACGAAGGAGAGAAGCTGGTGAAATTCAGTCAGGCGGGACAGGGCCGCGTGTCTCCTGTGAGCGAGGTGGACTTGGGAATCTACCAGCTCCAGTGCAGCGAGAAGCTTCTGGAGGAGCGCGTGGAGGCTCTGGGACACGAGGCCGAAAAGTGCAAGCAGCAGGCAAAATCGCTGCTTAAAGAGGGGAAGAAATCACAGGCCCTGAGGTGTTTACGTGGGAGCAAACGGGTGGAGAAGAAAGCGGATCGTCTGTTTGCTCAGCTTGAAACAGTGAAGGGGATCCTGGACAGAATAGCAAACTCCCAGACCGACCGCCTGGTGATGCAGGCATACCAGGCAGGTGTGGCGGCTCTGAGAATCTCACTGAAGGGTGTGACTGTGGAGCGAGCAGAAAACCTGGTTGATCAGATACAGGAGCTGTGCGACACTCAGGATGAAGTAAACCAGACTCTGGCCAGTGGGGCGCCGGATGCTGGAGAGGATTCGGAGGACTTGGAAGAGGAGCTGAAGTCATTAATGGAGAAAAGTGTCCCAGAAAACGATCTGTTCCCAGCAGTCCCGACACACCCCATTACTCCTCCGAGGAAAACGGATCTCCCAGATGCTGCTTTTGTCCAGTTTCTGCCCTCTGTGCCTAATCCTGGTATGAACATCACAGACGAGGAGCTGGACAGGGAACTACGTCGACTTACAGTCTCGGATAAAGGTTTGCCAAGAGAAAGCGTTTCGCCTCAGAGGAGACTTGAACCTGCGCAGTGATCATTTCAGCACAAGAAAGCACTTAAATGGGTTAATCGTTGTCCACGAAAGAAAGCCATCAGATAACGTACAGTACATGTGTGTCTATCGAGTCCTCATGACAAGCCCTTATTCATGTTTGTAATGTTCATCTTTGTTTTTAAAGAACGTTTTAAGAGTGGCCTTTTTGAGTTTGTAAAGTCTGTACAATGTATTATTCTAATAAAACCACAAATTATGATGCCAAA

Function

symbol description
chmp7 Predicted to be involved in several processes, including exit from mitosis; late endosome to vacuole transport via multivesicular body sorting pathway; and nuclear membrane reassembly. Predicted to act upstream of or within protein transport and vacuolar transport. Predicted to be located in nuclear envelope. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Orthologous to human CHMP7 (charged multivesicular body protein 7).

GO:

id name namespace
GO:0006900 vesicle budding from membrane biological_process
GO:0010458 exit from mitosis biological_process
GO:0007034 vacuolar transport biological_process
GO:0015031 protein transport biological_process
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway biological_process
GO:0045324 late endosome to vacuole transport biological_process
GO:0031468 nuclear envelope reassembly biological_process
GO:0005771 multivesicular body cellular_component
GO:0000815 ESCRT III complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04144 Endocytosis
ko04217 Necroptosis
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-1750 Predicted to be involved in several processes, including exit from mitosis; late endosome to vacuole transport via multivesicular body sorting pathway; and nuclear membrane reassembly. Predicted to act upstream of or within protein transport and vacuolar transport. Predicted to be located in nuclear envelope. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Orthologous to human CHMP7 (charged multivesicular body protein 7).

Ensembl:

ensembl_id ENSDARG00000041362

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071814 False 2967 mRNA 0.46 10 51350453 51365566
TCONS_00071815 True 1742 mRNA 0.51 11 51350977 51367298

Neighbor

gene id symbol gene type direction distance location
XLOC_036783 si:ch211-198o12.4 coding downstream 1022 51341612 ~ 51349431 (-)
XLOC_036782 kansl3 coding downstream 9522 51304099 ~ 51340931 (-)
XLOC_036780 bmp1a coding downstream 57152 51165392 ~ 51293301 (-)
XLOC_036781 NA coding downstream 137785 51212413 ~ 51212668 (-)
XLOC_036779 CR855300.2 coding downstream 322500 51027839 ~ 51027953 (-)
XLOC_036785 lgi3 coding upstream 8010 51375308 ~ 51404806 (-)
XLOC_036786 fgfr1a coding upstream 63299 51430597 ~ 51524453 (-)
XLOC_036787 ankrd39 coding upstream 205826 51573124 ~ 51579286 (-)
XLOC_036788 kctd9a coding upstream 219185 51586483 ~ 51599169 (-)
XLOC_036789 npy8br coding upstream 267505 51634803 ~ 51635930 (-)
XLOC_036777 NA non-coding downstream 396209 50953658 ~ 50954244 (-)
XLOC_036776 FO704819.1 non-coding downstream 452096 50889589 ~ 50898357 (-)
XLOC_036773 CABZ01060030.1 non-coding downstream 832550 50517782 ~ 50517903 (-)
XLOC_036793 NA non-coding upstream 619512 51986810 ~ 51988347 (-)
XLOC_036796 NA non-coding upstream 930403 52297701 ~ 52310627 (-)
XLOC_036797 NA non-coding upstream 1034359 52401657 ~ 52405146 (-)
XLOC_036801 NA non-coding upstream 1260209 52627507 ~ 52631484 (-)
XLOC_036805 NA non-coding upstream 1510524 52877822 ~ 52882776 (-)

Expression


Co-expression Network