XLOC_036780 (bmp1a)


Basic Information

Item Value
gene id XLOC_036780
gene name bmp1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 51165392 ~ 51293301 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071805
ATGGAGCTCGCGGCGAGGTGTGCGctcctgctctccagcttctcccTGCTCGCAGCGCTCGATCTGGACGCGATTGAGCCCGGCTACTATGTGGAGACCAGCAGCCCATCAGACCTGATCGACTATAAAGATCCCTGCAAAGCTGTGGCTTATCTTGGAGACATTGCGCTGGATGAGGAAGATATGCGCATGTTTACAGTCGACCGCATTGTGAATTTAGCCGACAGAACGGTCACAATTCTGAACCACACCAACACGGGTTCACTGTCGAATGAGACGAGTGTAAACACTACAGCGTCCAGCAGGGGGTCCCATCGCAGGAGGAGGGCGGCGACGTCCAGACCTGAGAGAGTGTGGCCTGAAGGCGTCATTCCTTATGTTATCAGCGGGAACTTCAGCGgTAGCCAGAGAGCCATATTCAGACAGGCCATGAGGCACTGGGAGAAACACACATGTGTGACGTTCATTGAGAGAACGACAGAAGAAAGCTACATCGTCTTCACCTACCGGCCGTGTGGGTGCTGTTCATACGTGGGCCGCAGAGGAGGGGGTCCGCAGGCCATATCCATCGGGAAAAACTGCGATAAGTTTGGAATTGTGGTGCATGAGCTCGGACACGTGATCGGATTCTGGCATGAGCACACGCGACCCGACAGAGACGAACACGTCAGTATCATACGAGACAACATTCAGCCAGGACAGGAGTACAACTTCCTGAAGATGGAGCCTGGAGAGGTGGACTCACTCGGAGAGGTTTACGACTTCGACAGCATCATGCACTACGCAAGAAACACCTTCTCCAGAGGGATATTTCTGGACACTATTCTGCCACGATATGATGTGAACGGCGTCCGGCCTCCTATAGGTCAGAGGACCAGGTTGAGTAAAGGAGACATCGCACAGGCACGCAAACTTTACAAGTGTCCAAGATGCGGAGATAGTTTGCAGGAGAGCAGCGGGAACTTCTCGTCTCCTGGTTATCCGAATGGTTATTCAGCATATATGCACTGCATTTGGAGGATTTCAGTCACGCCGGGTGAAAAGaTCATCCTGAACTTTACATCCATGGATTTATACCGGAGTCATTTATGTTGGTACGATCACGTGGAAATCAGGGATGGATATTGGAGGAAAGCACCGTTGAAAGGTCGATTCTGTGGGGATAAATTACCTGATCCGATCATCTCGACAGACAGTCGCCTGTGGATTGAGTTCCGCAGCAGCAGCAACTGGGTGGGAAAAGGCTTCTCTGCTGTTTATGAAGCTATTTGTGGTGGGGAAGTGAAGAAAGACAATGGTCAAATTCAGTCTCCAAACTACCCAGACGACTACAGACCGAACAAAGTGTGCGTGTGGAAGATCACCGTTGCCCAGGGTTACCACGTCGGCCTCACCTTCCAGTCTTTTGAGATCGAGAGGCATGATAACTGTGCGTACGACTACCTGGAGGTTCGAGACGGGAACTCGGAAAGCAGCCCGCTTTTGGGCAGGTTCTGCGGTTATGACAAACCTGATGATATTAAATCCAGTTCCAACCAGCTCTGGATGAAATTCGTGTCTGACGGTTCTGTTAATAAGGCCGGATTTGCTGCCAATTTCTTCAAAGAAATGGACGAGTGTTCCAGACCCGACAACGGTCGCTGTGAGCAACGCTGTGTCAACACTCTGGGTAGTTACAAGTGCGCCTGTGACCCCGGTTACGAACTGGCGGCGGACAAACGGAGCTGTGAAGcTGCCTGTGGGGGTTTCATCACCAAGCTGAACGGGTCCATCACCAGTCCCGGCTGGCCCAAAGAGTACCCACCTAACAAGAACTGCATCTGGCAGCTCGTGGCGCCGACGCAGTACCGCATCACGCTGCTTTTCGACGTCTTCGAGACCGAGGGCAACGATGTGTGTAAGTATGATTTCGTGGAGGTGAGAAGCGGTCTCTCTGCGGACTCCAGACTGCATGGCAAATTCTGCGGCGCTGAGAAACCCGAGGCCATCACTTCACAATACAACAACATGCGCATCGAGTTCAAGTCCGACAACACCGTGTCCAAGAAGGGCTTCAAGGCCCAGTTCTTCTCCGATAAAGACGAGTGCTCGAAGGAGAACGGCGGATGTCAGCATGAGTGTGTGAACACCTTCGGCAGCTACAGCTGTCAGTGCAGGAGCGGCTTCGTCCTGCATGAGAACAAACACGACTGCAAAGaggCCGGCTGTGATCATGTTGTGAACAGTGTGAGTGGGACCATCACCAGCCCCAACTGGCCAGATAAATACCCCAGTAAGAAGGCCTGCACCTGGGCTCTCTCCACCACGCCAGGACACCGCATCAAAATAGCTTTTAATGAAATCGACATGGAGCCTCATCTGGAATGTGCTTACGACCACATCGAGATTTATGACGGCCGGGATAGTAAAGCACAGAGTCTCGGACGCTACTGCGGCACCAAGAAACCTCAACCCATCATATCCACCGGAAACAAGATGTTCATCCGCTTCTTCTCGGATAACTCGGTGCAGAAGAAAGGCTTCGAGGCTTCCCATACTGCAGAGTGCGGAGGGCGTCTGAAAGCGGAGGTGAAGACTAAAGACCTCTATTCTCATGCCCAGTTTGGTGATAATAACTACCCCGGGGCATCGGACTGTCAGTGGGTGATCACAGCAGAGAAGGGCTACGGCGTGGAGCTCATCTTCCAGACCTTTGAAATCGAGGAGGAGGCCGACTGTGGCTACGATTACATGGAGCTGTTCGACGGAGCCGACACCAAATCACCCAGACTCGGACGCTACTGCGGATCAGGGCCTCCAGAAGAGATCTACTCAGCCGGCGACTCCATCGTCATCAAATTCCACTCTGACGACACCATCAACAAGAAGGGCTTCCACGTGCGCTACACCAGCACCAAGTTTCAGGACACACTCCACTCCCGTAAGAAGTGACCCCTAGTGGCCGGGAGGGGCCGTGCAGGGCCTAGGGGGAAGCGAAAGGGCCCCAGGGGGAGGTCCTCGCCCATCGCTCGGAGCCCCCCGGCCGCCAGGAACACCCAGACTCGACGGACCAGCCGCAAGAACTCCAACCGCACCTCAGTAGTTCACAGGGGCTCTGGCATCCCCTACTGACTGTGAGGAGTAAAGCCATTTCGCAGTAGACCTTGTTTTTACCTTCTTTTTTTAAACGATTACATTCGTGGGCAAGATGTGGATTAGGGGAGGGGGGGTGGAAAGTATTCAGTCGCTGGATACCAACATAGGGGCGAAATCAAAAGGGAGGGTGGGAAGGGTGGGCATAGCTGATCTGGTTACTAGAATCCCACTTGTCGCCTTTTCATGAGCCGAGAGTGCATACACGAAGGAACTCCCGCAGGAGAACCAACCGGTCAACCAAACTCAAATAGTAGGAAGGGAGAAAGGGGCATTCGGGACGCAAGTTTCCAACGTTGAATGGAGAGATTCACTGCAGCGCTGTGGGGAAACAACCGTCTCTTCTTGACTCTTCATTGCCTTGTTCATGATGGCCACCGTGGGCCAGTTCCTGTGTCGTCACTTGAGCAAATGACACTGTATGTCAAAGAGATGCATGTGGTACAGCTTGAAGGAAATGTGGACGTGATGGTGGCACCAGCATTTGTAATGATAACCCGCTATTTCCCTGGCCAGTAGTCCAGAAGGTTCCCTGCCCCCCCCCAACGAAATGATCAATCTCTAGGAGGTTTTCCAGAAACAGTTATCATATTAAAAGACTT
>TCONS_00071806
CGTCTGGACCTCTATTCCTGCTCCAGTCGCCCAATCATGGAGCTCGCGGCGAGGTGTGCGctcctgctctccagcttctcccTGCTCGCAGCGCTCGATCTGGACGCGATTGAGCCCGGCTACTATGTGGAGACCAGCAGCCCATCAGACCTGATCGACTATAAAGATCCCTGCAAAGCTGTGGCTTATCTTGGAGACATTGCGCTGGATGAGGAAGATATGCGCATGTTTACAGTCGACCGCATTGTGAATTTAGCCGACAGAACGGTCACAATTCTGAACCACACCAACACGGGTTCACTGTCGAATGAGACGAGTGTAAACACTACAGCGTCCAGCAGGGGGTCCCATCGCAGGAGGAGGGCGGCGACGTCCAGACCTGAGAGAGTGTGGCCTGAAGGCGTCATTCCTTATGTTATCAGCGGGAACTTCAGCGgTAGCCAGAGAGCCATATTCAGACAGGCCATGAGGCACTGGGAGAAACACACATGTGTGACGTTCATTGAGAGAACGACAGAAGAAAGCTACATCGTCTTCACCTACCGGCCGTGTGGGTGCTGTTCATACGTGGGCCGCAGAGGAGGGGGTCCGCAGGCCATATCCATCGGGAAAAACTGCGATAAGTTTGGAATTGTGGTGCATGAGCTCGGACACGTGATCGGATTCTGGCATGAGCACACGCGACCCGACAGAGACGAACACGTCAGTATCATACGAGACAACATTCAGCCAGGACAGGAGTACAACTTCCTGAAGATGGAGCCTGGAGAGGTGGACTCACTCGGAGAGGTTTACGACTTCGACAGCATCATGCACTACGCAAGAAACACCTTCTCCAGAGGGATATTTCTGGACACTATTCTGCCACGATATGATGTGAACGGCGTCCGGCCTCCTATAGGTCAGAGGACCAGGTTGAGTAAAGGAGACATCGCACAGGCACGCAAACTTTACAAGTGTCCAAGATGCGGAGATAGTTTGCAGGAGAGCAGCGGGAACTTCTCGTCTCCTGGTTATCCGAATGGTTATTCAGCATATATGCACTGCATTTGGAGGATTTCAGTCACGCCGGGTGAAAAGaTCATCCTGAACTTTACATCCATGGATTTATACCGGAGTCATTTATGTTGGTACGATCACGTGGAAATCAGGGATGGATATTGGAGGAAAGCACCGTTGAAAGGTCGATTCTGTGGGGATAAATTACCTGATCCGATCATCTCGACAGACAGTCGCCTGTGGATTGAGTTCCGCAGCAGCAGCAACTGGGTGGGAAAAGGCTTCTCTGCTGTTTATGAAGCTATTTGTGGTGGGGAAGTGAAGAAAGACAATGGTCAAATTCAGTCTCCAAACTACCCAGACGACTACAGACCGAACAAAGTGTGCGTGTGGAAGATCACCGTTGCCCAGGGTTACCACGTCGGCCTCACCTTCCAGTCTTTTGAGATCGAGAGGCATGATAACTGTGCGTACGACTACCTGGAGGTTCGAGACGGGAACTCGGAAAGCAGCCCGCTTTTGGGCAGGTTCTGCGGTTATGACAAACCTGATGATATTAAATCCAGTTCCAACCAGCTCTGGATGAAATTCGTGTCTGACGGTTCTGTTAATAAGGCCGGATTTGCTGCCAATTTCTTCAAAGAAATGGACGAGTGTTCCAGACCCGACAACGGTCGCTGTGAGCAACGCTGTGTCAACACTCTGGGTAGTTACAAGTGCGCCTGTGACCCCGGTTACGAACTGGCGGCGGACAAACGGAGCTGTGAAGcTGCCTGTGGGGGTTTCATCACCAAGCTGAACGGGTCCATCACCAGTCCCGGCTGGCCCAAAGAGTACCCACCTAACAAGAACTGCATCTGGCAGCTCGTGGCGCCGACGCAGTACCGCATCACGCTGCTTTTCGACGTCTTCGAGACCGAGGGCAACGATGTGAGCACTAGGTTTTTACCACTGAGTGGGGTGTGTAAGTATGATTTCGTGGAGGTGAGAAGCGGTCTCTCTGCGGACTCCAGACTGCATGGCAAATTCTGCGGCGCTGAGAAACCCGAGGCCATCACTTCACAATACAACAACATGCGCATCGAGTTCAAGTCCGACAACACCGTGTCCAAGAAGGGCTTCAAGGCCCAGTTCTTCTCCGATAAAGACGAGTGCTCGAAGGAGAACGGCGGATGTCAGCATGAGTGTGTGAACACCTTCGGCAGCTACAGCTGTCAGTGCAGGAGCGGCTTCGTCCTGCATGAGAACAAACACGACTGCAAAGaggCCGGCTGTGATCATGTTGTGAACAGTGTGAGTGGGACCATCACCAGCCCCAACTGGCCAGATAAATACCCCAGTAAGAAGGCCTGCACCTGGGCTCTCTCCACCACGCCAGGACACCGCATCAAAATAGCTTTTAATGAAATCGACATGGAGCCTCATCTGGAATGTGCTTACGACCACATCGAGATTTATGACGGCCGGGATAGTAAAGCACAGAGTCTCGGACGCTACTGCGGCACCAAGAAACCTCAACCCATCATATCCACCGGAAACAAGATGTTCATCCGCTTCTTCTCGGATAACTCGGTGCAGAAGAAAGGCTTCGAGGCTTCCCATACTGCAGAGTGCGGAGGGCGTCTGAAAGCGGAGGTGAAGACTAAAGACCTCTATTCTCATGCCCAGTTTGGTGATAATAACTACCCCGGGGCATCGGACTGTCAGTGGGTGATCACAGCAGAGAAGGGCTACGGCGTGGAGCTCATCTTCCAGACCTTTGAAATCGAGGAGGAGGCCGACTGTGGCTACGATTACATGGAGCTGTTCGACGGAGCCGACACCAAATCACCCAGACTCGGACGCTACTGCGGATCAGGGCCTCCAGAAGAGATCTACTCAGCCGGCGACTCCATCGTCATCAAATTCCACTCTGACGACACCATCAACAAGAAGGGCTTCCACGTGCGCTACACCAGCACCAAGTTTCAGGACACACTCCACTCCCGTAAGAAGTGACCCCTAGTGGCCGGGAGGGGCCGTGCAGGGCCTAGGGGGAAGCGAAAGGGCCCCAGGGGGAGGTCCTCGCCCATCGCTCGGAGCCCCCCGGCCGCCAGGAACACCCAGACTCGACGGACCAGCCGCAAGAACTCCAACCGCACCTCAGTAGTTCACAGGGGCTCTGGCATCCCCTACTGACTGTGAGGAGTAAAGCCATTTCGCAGTAGACCTTG

Function

symbol description
bmp1a Enables peptidase activity. Acts upstream of or within several processes, including collagen biosynthetic process; determination of ventral identity; and protein phosphopantetheinylation. Is expressed in several structures, including alar plate midbrain region; central nervous system; mesenchyme median fin fold; mesoderm; and optic vesicle. Used to study osteogenesis imperfecta and osteogenesis imperfecta type 13. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 13. Orthologous to human BMP1 (bone morphogenetic protein 1).

GO:

id name namespace
GO:0001501 skeletal system development biological_process
GO:0001503 ossification biological_process
GO:0048264 determination of ventral identity biological_process
GO:0032964 collagen biosynthetic process biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0006508 proteolysis biological_process
GO:0033333 fin development biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060818-1 Enables peptidase activity. Acts upstream of or within several processes, including collagen biosynthetic process; determination of ventral identity; and protein phosphopantetheinylation. Is expressed in several structures, including alar plate midbrain region; central nervous system; mesenchyme median fin fold; mesoderm; and optic vesicle. Used to study osteogenesis imperfecta and osteogenesis imperfecta type 13. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 13. Orthologous to human BMP1 (bone morphogenetic protein 1).

Ensembl:

ensembl_id ENSDARG00000028071

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071805 False 3734 mRNA 0.53 20 51165392 51293265
TCONS_00071806 True 3212 mRNA 0.54 20 51165980 51293301

Neighbor

gene id symbol gene type direction distance location
XLOC_036779 CR855300.2 coding downstream 137439 51027839 ~ 51027953 (-)
XLOC_036778 rab7b coding downstream 184217 50968990 ~ 50981175 (-)
XLOC_036777 NA coding downstream 211148 50953658 ~ 50954244 (-)
XLOC_036776 FO704819.1 coding downstream 267035 50889589 ~ 50898357 (-)
XLOC_036775 acsl2 coding downstream 276586 50840565 ~ 50888806 (-)
XLOC_036782 kansl3 coding upstream 10798 51304099 ~ 51340931 (-)
XLOC_036783 si:ch211-198o12.4 coding upstream 48311 51341612 ~ 51349431 (-)
XLOC_036784 chmp7 coding upstream 57152 51350453 ~ 51367298 (-)
XLOC_036785 lgi3 coding upstream 82007 51375308 ~ 51404806 (-)
XLOC_036786 fgfr1a coding upstream 137296 51430597 ~ 51524453 (-)
XLOC_036773 CABZ01060030.1 non-coding downstream 647489 50517782 ~ 50517903 (-)
XLOC_036772 NA non-coding downstream 653505 50508761 ~ 50511887 (-)
XLOC_036793 NA non-coding upstream 693509 51986810 ~ 51988347 (-)
XLOC_036796 NA non-coding upstream 1004400 52297701 ~ 52310627 (-)
XLOC_036797 NA non-coding upstream 1108356 52401657 ~ 52405146 (-)
XLOC_036801 NA non-coding upstream 1334206 52627507 ~ 52631484 (-)
XLOC_036805 NA non-coding upstream 1584521 52877822 ~ 52882776 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_04442645_04542984 BMP1A, BMP1 coding CI01000050 null 4442415 ~ 4543263 (-)