XLOC_036778 (rab7b)


Basic Information

Item Value
gene id XLOC_036778
gene name rab7b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 50968990 ~ 50981175 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071801
TGCGTCAGTCCCTTGTGACTCCAGTCATGTCCTGTTCTGCCAGGAGGAAACACATACTGCTCTTCAACAGCTGATGTGCATCTGGAGCAGCAGAACATTGGTGGTTTTGTGTTGAACCGCTTTTGAGAAGATTCGGACAGCTGCGACGGTAAACGCGAAGAGTTGAAGCAGTGTCCTTCCACACAACATGGCTTCCCGTAAAAAGGTCCTCCTCAAAGTGATCATCCTAGGGGATTCTGGAGTTGGGAAGACCTCTTTGATGAACCAGTATGTGAATAATAAGTTCAGTAATCAGTATAAGGCCACCATTGGTGCAGACTTTCTGACAAAGGAGGTGATGGTGGACGACAGACTGGTGACCATGCAGATTTGGGACACAGCCGGTCAGGAGCGGTTTCAGTCTCTGGGCGTGGCCTTCTACAGAGGGGCGGACTGTTGTGTGCTGGTGTACGATGTCACGGCGCCCACCACGTTTAAGACTCTGGACAGCTGGAGGGACGAGTTTCTCATTCAGGCCAGTACAAGCGACCCGGAGAACTTCCCCTTTGTTGTGCTGGGCAACAAAATCGACCTGGACAACCGACAGGTATCGACAAAGCGAGCACAAGCGTGGTGTCAGAGTAAGAACAACATCCCCTATTTTGAGACCAGCGCCAAAGAAGCCATTAATGTGGAACAGGCCTTCCAGACCATCGCTCGCAATGCGCTTAAACAGGAGTCGGTGGACAAATATGATTTCCCGGACGAGATCAAACTAGGAAACGACAGACCCATGTCTAACGGTGAAGGCTGCAGCTGCTGAAGGAAAACAATGAAGCTGTGGAGGGACGAGAAACAGCCAACATGAGAAAGGGAAAGATCCAGGCCAGTCTTTCCTAAAGCCCCCTTTAACTCCTTTGAAAACTGCAGGGTATCAAATGCCACGTGTGACTATTGAACATCTATTTTCTTGCTGAACTCCAAGTTACGTGGAAGAAGTATGGAGGAGCAGGAAGAGCTGTATATCCTCTGACAAGTTCTACTATCACTACAGCTGCCCAAGTATTTGTGTCACTACTCCTGCTGTCAGATTGCGTTTATTTTCTCTgaaaatccagcctgatctcataaagaaacgtaactattttatgtacTGTCAGACAAGTGGCTAATTCTACTAAGATTACTTTAAGGCAAGCAATTTtactcagcggccatctttgaaatgcctcttaaGCAGTTCTGTTTGAATgtggaaacattaaattctccaaaactgtt
>TCONS_00071802
AACATGGCTTCCCGTAAAAAGGTCCTCCTCAAAGTGATCATCCTAGGGGATTCTGGAGTTGGGAAGACCTCTTTGATGAACCAGTATGTGAATAATAAGTTCAGTAATCAGTATAAGGCCACCATTGGTGCAGACTTTCTGACAAAGGAGGTGATGGTGGACGACAGACTGGTGACCATGCAGATTTGGGACACAGCCGGTCAGGAGCGGTTTCAGTCTCTGGGCGTGGCCTTCTACAGAGGGGCGGACTGTTGTGTGCTGGTGTACGATGTCACGGCGCCCACCACGTTTAAGACTCTGGACAGCTGGAGGGACGAGTTTCTCATTCAGGCCAGTACAAGCGACCCGGAGAACTTCCCCTTTGTTGTGCTGGGCAACAAAATCGACCTGGACAACCGACAGGTATCGACAAAGCGAGCACAAGCGTGGTGTCAGAGTAAGAACAACATCCCCTATTTTGAGACCAGCGCCAAAGAAGCCATTAATGTGGAACAGGCCTTCCAGACCATCGCTCGCAATGCGCTTAAACAGGAGTCGGTGGACAAATATGATTTCCCGGACGAGATCAAACTAGGAAACGACAGACCCATGTCTAACGGTGAAGGCTGCAGCTGCTGA
>TCONS_00071803
CAGTGTCCTTCCACACAACATGGCTTCCCGTAAAAAGGTCCTCCTCAAAGTGATCATCCTAGGGGATTCTGGAGTTGGGAAGACCTCTTTGATGAACCAGTATGTGAATAATAAGTTCAGTAATCAGTATAAGGCCACCATTGGTGCAGACTTTCTGACAAAGGAGGTGATGGTGGACGACAGACTGGTGACCATGCAGGTATCGACAAAGCGAGCACAAGCGTGGTGTCAGAGTAAGAACAACATCCCCTATTTTGAGACCAGCGCCAAAGAAGCCATTAATGTGGAACAGGCCTTCCAGACCATCGCTCGCAATGCGCTTAAACAGGAGTCGGTGGACAAATATGATTTCCCGGACGAGATCAAACTAGGAAACGACAGACCCATGTCTAACGGTGAAGGCTGCAGCTGCTGA

Function

symbol description
rab7b Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in endosome to lysosome transport and phagosome-lysosome fusion. Predicted to be active in late endosome; lysosome; and phagocytic vesicle. Is expressed in intestinal bulb; neural crest; and yolk syncytial layer.

GO:

id name namespace
GO:0090385 phagosome-lysosome fusion biological_process
GO:0008333 endosome to lysosome transport biological_process
GO:0005764 lysosome cellular_component
GO:0005770 late endosome cellular_component
GO:0045335 phagocytic vesicle cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko04145 Phagosome
ko04140 Autophagy - animal
ko04137 Mitophagy - animal
ko05132 Salmonella infection
ko05146 Amoebiasis
ko04131 Membrane trafficking
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-180906-1 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in endosome to lysosome transport and phagosome-lysosome fusion. Predicted to be active in late endosome; lysosome; and phagocytic vesicle. Is expressed in intestinal bulb; neural crest; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDARG00000021287

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071801 False 1260 mRNA 0.47 6 50968990 50981175
TCONS_00071802 False 618 mRNA 0.51 5 50969448 50979047
TCONS_00071803 True 415 mRNA 0.48 4 50969448 50979063

Neighbor

gene id symbol gene type direction distance location
XLOC_036777 NA coding downstream 14746 50953658 ~ 50954244 (-)
XLOC_036776 FO704819.1 coding downstream 70633 50889589 ~ 50898357 (-)
XLOC_036775 acsl2 coding downstream 80184 50840565 ~ 50888806 (-)
XLOC_036774 CABZ01060030.2 coding downstream 443630 50520139 ~ 50525360 (-)
XLOC_036773 CABZ01060030.1 coding downstream 451087 50517782 ~ 50517903 (-)
XLOC_036779 CR855300.2 coding upstream 46664 51027839 ~ 51027953 (-)
XLOC_036780 bmp1a coding upstream 184217 51165392 ~ 51293301 (-)
XLOC_036781 NA coding upstream 231238 51212413 ~ 51212668 (-)
XLOC_036782 kansl3 coding upstream 322924 51304099 ~ 51340931 (-)
XLOC_036783 si:ch211-198o12.4 coding upstream 360437 51341612 ~ 51349431 (-)
XLOC_036772 NA non-coding downstream 457103 50508761 ~ 50511887 (-)
XLOC_036766 NA non-coding downstream 829007 50137475 ~ 50139983 (-)
XLOC_036793 NA non-coding upstream 1005635 51986810 ~ 51988347 (-)
XLOC_036796 NA non-coding upstream 1316526 52297701 ~ 52310627 (-)
XLOC_036797 NA non-coding upstream 1420482 52401657 ~ 52405146 (-)

Expression


Co-expression Network