XLOC_036772


Basic Information

Item Value
gene id XLOC_036772
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 50508761 ~ 50511887 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072541
AAGTACACAACAGAGGTGTAAAAAGTATTTGTGAAATTGGCTATTATAcgcattatattaatattttgttttgtactTTAAGTCCTCATGAATTCAAAACTTACGATGTTTTACTTTGCTAGTCTTAAGGTGAACAAAGAATCTGTacttgttttggtaatctttaatcaaaatttgGTCATTTGCGAAAATACGCTGAGCAGATTCAATCGTTAGTTTGCTGCCagtgaaagatgagaggaggagctcaaaaataaaaccccgccccccaCTTAATATTCCATTTTAGTTGTAAGTACATCATCATGCTGGAATAAAATTCCACAACAACTTTTCGGTTCACTGAaatagttttagtaaaaacaaatactgatTTATCATCATTAAGCATAAAGTACACAGCAGAGGTGTAAAAATAATTCAAGTAATTGTACTTAGCTTTTATACgcattatatttatatgttattttataCTTAAAGTCTTCATAAAATCAAAATTTACGATATTTTACTTTGCTTATCTTAAGGTGAAGAAATAATCagggtttgttttggtaatctttaatcaaaatctgatcATTTGCGAAAATACGCTGAGCAGATTCAACTATTAGTTTGCTGcaagtgaaagatgagaggaggagctcaaaaataaaaccccgcccaCTACTTTATATTCCATTTTAGTTGTAAGTGCATCATCATGCTGGATTAAAATTCCACAACAACTTTTCGGTTCACTGAAattgttttagtaaaaacaaatactgatTTGTCATCATTAAGGGTAAAGAACACAGCAGAGGTGTAAAAAGTATTTGAGAACTTGGCTATTATAcgcattatattaatattttgttttatacttAAAGTTCTCATGAAATCAAAACTTACAATGTTTTACTTTGCTAGTCTTAAAGTGAACAAATAATCAGGGTTTGTTTTGATCATCTTATTCATGtacaaactgaaattaaactttaataaagCTGCCAAAATAGACAGCATTCAAAAAATCTCTTTACAATGTCGTCCACCATGTAAgctgaattggtcacatgactgcatCACATGACTAAAATGCATCATCATTTTTGAAAAGCCTCCATTTTCACAGTGCAGCACAAAAACGgcattttaaaatttttgttttcaatttctaaaaatgGTGTCTTAGTGTGAACAAAAGGCCAAAACAGAGACAAAAATTTGCTCTTCCAAACAAAAtcatttaaagtccacatgaaccggaagctgcgaccCTTTTTTTTCCCGTACTTGGATTCAGTTTTTATAGAAAAACGgaattttaaatgctaaaacagtgggtgtggcttgtttttttctactgcgagctaattgaatgtagtaaagtaggcatttaattcagaaagatggggagaAGGGTTTggggtgggggaggggggggTGGAGTTACTAacacctaacagactcctcctgctcaccatttctgtttgttgtcaaaactgacagctggaggggcgtggctaattatgttagccccgcccaattcctcagacagatgtaatctgacaatttaactgaaaacaaacaggaagtgcatatttttagatttcaattaaagataaCAAGGGAAAATTATTGCTTATTCTTAACGACGTGCACAGAGGAATTGTTGACAGCAAAACTAAATgctaaaattaacaaaattaatatggttagtttgatttcatgtgtactttaatgtGAATAAGCCCTTAATTAACCattcaacacattaaaaaaaatccagaattTGTTGCTCTTTATGATTAACGCTGCGTTTAAATATATCGATGCTTCTCACAAATTTACTCTCACAAAACGTACTGAAATAAGGAAGAAGATATAAATTGTGAGAAGCATTTAATGTTAGCGCCACCTAAGAGAAACCTAACGCACATGATTAGAGATTTTTCGGTTTTTAATCACCCAACAATATCGTAAAAGAGATTATAAAAACTTTCTGTGAgcaaaatatgaaacaaatacGCCAATAGTCAGGTCTGAACATTTCTACACCGTTAATAGAACcgacagtaacttactgtaatcaataacagcaagaaaaaaaaaaaccctatttACATTTACGGCACCATCTGTCTTGCTGTATTTGCATTCTCAGTATTATATACCTTGACAGTATTTTCACAATgcgactttaaaatacagtaacatactgcataactgtcctaaagTAAAATcgagttcatattacagttaaatactgtgtaatttacaaaaattggtGTAATCTGTTGCTGCAGAGATGAAACCCCATGCCTTAATGTAAAGTACACAAGAAAAGCGTTGCTGTTACTCACTGTTTGTACTTTAAATGTGTTGTAAGCATTTCTGTATTATATGTGTTGTACGCCAAGCAGGTGCACAGTGTGTAAAAACTCATATTGTATTGTTTatgatgttttttgttgttatgttCCAACGTTATTATGTGATAGTGTCTCTGTGATACGGGAATGTGTTGTTATCATTTATTGCCTTTCATTGCTAAGATCATGCACATTGCGGAGTCCATTTTCCATTCAATCAGGGCTGGAAACTGGACTTACTATAGTCAAAAGTTtggaattgttattattataattattattattattattattattttgaaaagtttgaTGAGTACAGATTGGATTATGAGgtattacaatttaaaagaaCTGTCTTGTggtttttaacatatatatata

Function

GO:

id name namespace
GO:0070482 response to oxygen levels biological_process
GO:0036293 response to decreased oxygen levels biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0001666 response to hypoxia biological_process
GO:0042060 wound healing biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0008201 heparin binding molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0030234 enzyme regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072541 True 2738 lncRNA 0.33 2 50508761 50511887

Neighbor

gene id symbol gene type direction distance location
XLOC_036771 ido1 coding downstream 25980 50463227 ~ 50482781 (-)
XLOC_036770 stc1 coding downstream 162515 50322769 ~ 50346246 (-)
XLOC_036769 nkx2.7 coding downstream 220812 50284859 ~ 50287949 (-)
XLOC_036768 nkx3-1 coding downstream 249313 50256930 ~ 50259448 (-)
XLOC_036767 hp coding downstream 360813 50143194 ~ 50147948 (-)
XLOC_036773 CABZ01060030.1 coding upstream 5895 50517782 ~ 50517903 (-)
XLOC_036774 CABZ01060030.2 coding upstream 8252 50520139 ~ 50525360 (-)
XLOC_036775 acsl2 coding upstream 328678 50840565 ~ 50888806 (-)
XLOC_036776 FO704819.1 coding upstream 377702 50889589 ~ 50898357 (-)
XLOC_036777 NA coding upstream 441771 50953658 ~ 50954244 (-)
XLOC_036766 NA non-coding downstream 368778 50137475 ~ 50139983 (-)
XLOC_036762 NA non-coding downstream 637179 49864078 ~ 49871582 (-)
XLOC_036761 NA non-coding downstream 682844 49803988 ~ 49825917 (-)
XLOC_036746 CT737131.1 non-coding downstream 1356286 49149904 ~ 49152475 (-)
XLOC_036745 NA non-coding downstream 1443722 49043744 ~ 49065039 (-)
XLOC_036779 CR855300.2 non-coding upstream 515952 51027839 ~ 51027953 (-)
XLOC_036781 NA non-coding upstream 700526 51212413 ~ 51212668 (-)

Expression


Co-expression Network