XLOC_036770 (stc1)


Basic Information

Item Value
gene id XLOC_036770
gene name stc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 50322769 ~ 50346246 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071795
CGGCTGCAAGAAGAAACTGCCGGAGAGATCAGCCGGACAGACGGAGCCTTCATGATACTGCCCACATCGCGCGCGCATTTCCTCAACCAAGTCGCCAAGAACGCGCATAAAGGCGTTAAGGAAATCCTCTTTTCTTGCCCTTCGTAATAGCATCATCCAGTGAGAGATATGCCGCCGAGGACCGGACTTTTGCTGCTCGCCGTGCTCATCGCCTCCGCGTACGAACTGGATCAGAACGAATCCTACTCGCCCAGGAGAGCACGCTTCTCCCACAACAGCCCCTCGGATGTGGCGCGGTGCTTGAACAGTGCGCTCCAAGTGGGCTGCGGTGCCTTTGCCTGTCTCGAAAACTCAACGTGTGACACAGATGGCATGCACGACATCTGCAAGTCCTTTCTCTACAGTGCTGCTAAATTTGACACTCAGGGCAAGGCTTTTGTGAAAGAAAGCTTGAAGTGTATCGCCAATGGCATCACTTCCAAGATCTTTCTGACAGTGAGACGGTGCTCCACCTTTCAGAGGATGATTTCAGAAGTTCAGGAGGAGTGTTACAGCAAGTTGGACATTTGCACAGTGGCCAAATCAAACCCAGAAGCCATTGCAGAGGTGGCTAAGCTGCCAAGCCACTTTCCCAACAGGTTTTATGGGAAACTACTGCAGAGTTTGATGGAGTGTGACGATGAGACGGTGGACCTGGTGAGGGCAAATCTGCTGACCCGATTAGGGCCCGAGATCACCATTCTCTTCCAGCTACTGCAGAACAAGCCGTGTCCGTCTGCTGCGGTACCTACCGGAATGGAGACTCGTGGTGGGTGGCGGTGGTCCGTCAGTCCCAACGGATACAAGAACCAGCCAAATCTACGCAACAGAGATGCCTCCAATCTCTTTGGCAAGAAACGAAGCATCGGTGACAGCTCTTAATTTCAGAGCAGTTCGAACTTTGCCATCAAGCACACATACATAAGCgcaaattgaaagaaaaaaaaaaaa

Function

symbol description
stc1 Predicted to enable hormone activity. Predicted to be involved in cellular calcium ion homeostasis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in corpuscles of Stannius and pronephric distal early tubule. Orthologous to human STC1 (stanniocalcin 1).

GO:

id name namespace
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-79 Predicted to enable hormone activity. Predicted to be involved in cellular calcium ion homeostasis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in corpuscles of Stannius and pronephric distal early tubule. Orthologous to human STC1 (stanniocalcin 1).

Ensembl:

ensembl_id ENSDARG00000003303

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071795 True 990 mRNA 0.52 4 50322769 50346246

Neighbor

gene id symbol gene type direction distance location
XLOC_036769 nkx2.7 coding downstream 34820 50284859 ~ 50287949 (-)
XLOC_036768 nkx3-1 coding downstream 63321 50256930 ~ 50259448 (-)
XLOC_036767 hp coding downstream 174821 50143194 ~ 50147948 (-)
XLOC_036766 NA coding downstream 182786 50137475 ~ 50139983 (-)
XLOC_036765 si:ch73-132k15.2 coding downstream 187225 50134007 ~ 50135544 (-)
XLOC_036771 ido1 coding upstream 116981 50463227 ~ 50482781 (-)
XLOC_036772 NA coding upstream 162515 50508761 ~ 50511887 (-)
XLOC_036773 CABZ01060030.1 coding upstream 171536 50517782 ~ 50517903 (-)
XLOC_036774 CABZ01060030.2 coding upstream 173893 50520139 ~ 50525360 (-)
XLOC_036775 acsl2 coding upstream 494319 50840565 ~ 50888806 (-)
XLOC_036762 NA non-coding downstream 451187 49864078 ~ 49871582 (-)
XLOC_036761 NA non-coding downstream 496852 49803988 ~ 49825917 (-)
XLOC_036746 CT737131.1 non-coding downstream 1170294 49149904 ~ 49152475 (-)
XLOC_036745 NA non-coding downstream 1257730 49043744 ~ 49065039 (-)
XLOC_036776 FO704819.1 non-coding upstream 543343 50889589 ~ 50898357 (-)
XLOC_036777 NA non-coding upstream 607412 50953658 ~ 50954244 (-)
XLOC_036779 CR855300.2 non-coding upstream 681593 51027839 ~ 51027953 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_03759473_03767344 STC1 coding CI01000050 null 3759425 ~ 3767563 (-)
bowfin (Amia calva) AMCG00021025 NA coding CM030127.1 CM030127.1 42062717 ~ 42091656 (+)