CI01000050_03759473_03767344 (STC1)


Basic Information

Item Value
gene id CI01000050_03759473_03767344
gene name STC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3759425 ~ 3767563 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_03759473_03767344.mRNA
AGAATGTACATCTGAGATCTTGCCCTAACCTGCTCCTATGGACAATAGACATATTCATTGCATGACATTTGGGGGGTTTCTGGTTATTTCAGAAGTCTGCCTTTTGCCAGGAGCATTGACACAGCAACACACAGCCTATTTTTCCTTCAGATACAGTAAAGTGAGTGTGTAGTAACACCAGTCCCTCTGACACAAACACCCTTGAGGTTTTTTCTCGGCATGGCATGGGATCCCAGCCCTGCAGGCTACGAGTTTGTGCAGCAAAACGTTTATAGTCTTTGGCGCGGAACTGTTGTAGGTGGTGGTTTTGGCCCTCTTACTAACCCCGCTGAACATTATTGTCTTGTCACATGTAACGGTAATGGAAACAATGGGTCTTGCGCCAAAAGAGACAGTCAGCAGAACCCAATAGAGAGTGTTCCCCCAGACTGGATGGTATTTAAACATCCCGTAGGCTGGAAGGTGATAATGAGAATGTGTCCCCTTAAAAATGATCCCATGTTCACTTGTAAGCAAGCGGATGTGGCACGCTGCTTGAACACTGCACTCCAGGTGGGCTGCGGTGCCTTCGCCTGTCTCGAAAACTCAACCTGTGACACAGATGGCATGCATGACATCTGCAGGTCCTTTCTCTACAGTGCTGCTAAATTCGACACTCAGGGAAAGGCTTTTGTGAAAGAAAGCTTGAAGTGCATCGCCAATGGCATCACTTCTAAGATCTTTCTAACAGTCAGACGGTGTTCCACCTTCCAGAGGATGATATTGGAGGTTCAAGAGGAGTGTTACAGCAAGTTGGACATTTGTACAGTGGCCAAATCAAACCCAGAAGCCATTGCAGAGGTGGCTCAGCTACCCAGCCACATTCCCAACAGGTTTTATGGGAAACTACTGCAGAGTTTGATGGAGTGTGACGATGAGACGGTGGACCTGGTGAGGGCAAATCTGTTGACCCGATTAGGGCCCGAGATCACCATGCTCTTCCAACTACTGCAGAACAAGCCGTGTCCGTCTGCTGCAGTACCTACTGGAATGGAGACTCGTGGGTTAATCAGCTATATAGAGTATATCATTAGCTTTAACAGAGTAACTGACATCCAGTATTTCATAGCGCTGGAGGGCGATGCGGTTCAGCCATCGTACACGTTAATTTGGGGCAGTCGCTGCAAAGTGTTTTCCGGAGCCATTCTCGACACTATGCAATATACAACGTTTCAGAAAGGCCTGTTTCTCTCAGAGTGTTTACCCAGGGTGAATGGGGAAGATCTCTTTTTCTGGTATCTCAGCAACAAGGTGTCCATACCATCTCCAGAGAAACAGCAGCGAGTGCAGACGTTTGCCTCAAGCCAGCTCAAAGACATCTGATTTTGTGTTTAAAAAGATGCTGGCGACCTACTCTTAAGTAGCATTAAA

Function

symbol description
stc1 Predicted to enable hormone activity. Predicted to be involved in cellular calcium ion homeostasis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in corpuscles of Stannius and pronephric distal early tubule. Orthologous to human STC1 (stanniocalcin 1).

NR:

description
stanniocalcin 1

GO:

id name namespace
GO:0005179 hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_03759473_03767344.mRNA True 1410 mRNA 0.47 7 3759425 3767563

Neighbor

gene id symbol gene type direction distance location
CI01000050_03721951_03724091 NKX2.7 coding downstream 34973 3721797 ~ 3724452 (-)
CI01000050_03672005_03672822 NKX3-1 coding downstream 86537 3671906 ~ 3672888 (-)
CI01000050_03635030_03637939 NA coding downstream 120265 3634573 ~ 3639160 (-)
CI01000050_03491159_03514757 NA coding downstream 244668 3491088 ~ 3514757 (-)
CI01000050_03362364_03363241 NA coding downstream 395168 3362284 ~ 3364257 (-)
CI01000050_03776675_03777031 NA coding upstream 9021 3776584 ~ 3777215 (-)
CI01000050_03798634_03799395 NA coding upstream 31052 3798615 ~ 3799395 (-)
CI01000050_03916668_03927175 NA coding upstream 146807 3914370 ~ 3927175 (-)
CI01000050_04208939_04225972 ACSL2 coding upstream 441376 4208939 ~ 4225972 (-)
CI01000050_04247305_04272766 NA coding upstream 479481 4247044 ~ 4272766 (-)
G214534 NA non-coding downstream 2376 3756840 ~ 3757049 (-)
G214530 NA non-coding downstream 6157 3753047 ~ 3753268 (-)
G214529 NA non-coding downstream 7901 3751317 ~ 3751524 (-)
G214524 NA non-coding downstream 30613 3728597 ~ 3728812 (-)
G214521 NA non-coding downstream 41460 3717670 ~ 3717965 (-)
G214544 NA non-coding upstream 34972 3802535 ~ 3803106 (-)
G214560 NA non-coding upstream 66960 3834523 ~ 3835238 (-)
G214562 NA non-coding upstream 70984 3838547 ~ 3838774 (-)
G214990 NA non-coding upstream 136819 3904382 ~ 3904593 (-)
G214991 NA non-coding upstream 137250 3904813 ~ 3905070 (-)
G214436 NA other downstream 170368 3525816 ~ 3589057 (-)
G214314 NA other downstream 335168 3413448 ~ 3424257 (-)
G214027 NA other downstream 1186523 2557166 ~ 2572902 (-)
G214017 NA other downstream 1294727 2462176 ~ 2464698 (-)
CI01000050_04564233_04580815 KANSL3 other upstream 796124 4563687 ~ 4581278 (-)
G215935 NA other upstream 1281353 5048916 ~ 5073109 (-)
G216093 NA other upstream 1721994 5489557 ~ 5552103 (-)
G216408 NA other upstream 2588454 6356017 ~ 6356511 (-)
G216931 NA other upstream 3396532 7164095 ~ 7165401 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036770 stc1 coding NC_007119.7 CM002892.2 50322769 ~ 50346246 (-)