G214017


Basic Information

Item Value
gene id G214017
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 2462176 ~ 2464698 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU242775
GCGGAGGGGCGGAGGTCATGTGTACAGGCTGTGGCGACGGTGCACTGCTGCGTTCCTTGAGTCTGGACACACTCGGGTCCTCGAGTTCAGAGTCGCTGGAGTCTGGCTGTGAGGGTGATGAGGCTGGGCCGGCGATGAAGGGCAGCATCGGCTGACCCATTCTGGCCATGCGTGAGATCAGTTTAGCTTTAGTGGCATCGGGATTACTGAGCTGTTCACTGAGGGAGTTTGATTTTGCTCGAAGTGGCGGTTCACTGGGTTTGCCAGGTTGTGGGGCAGAGCTGAGGTGCTGGTTCAAATCAGAGGGGCCCAGACTCTCAACGCTGGGAGCCGGAGACGGAGCCGCCAAATCACTCGAACTTCCATCCTTTGCAAACTTAACCCGGCGGATCTCCGCTTCAAAGACTAGTATGCTGTCCGGAGGCACGCGGTTGGGAACGCCCTGCGATCCGTACGCGAGACTGGGCGGAATCACCATGAGGCGCCTTCCACCTTTGCGCATGTTCAACATCCCCTCCTCCCAGCCCTTGACCTTACCAGCCCCGAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU242775 True 548 TUCP 0.59 6 2462176 2464698

Neighbor

gene id symbol gene type direction distance location
CI01000050_02449354_02450013 NA coding downstream 11554 2449336 ~ 2450622 (-)
CI01000050_02407311_02413917 NA coding downstream 48259 2406440 ~ 2413917 (-)
CI01000050_02393197_02400057 LMO4A, LMO41 coding downstream 62119 2392836 ~ 2400057 (-)
CI01000050_02332320_02334175 BCL2L16 coding downstream 128001 2332179 ~ 2334175 (-)
CI01000050_02230904_02233429 NA coding downstream 228747 2228865 ~ 2233429 (-)
CI01000050_02488032_02496421 STAMBPB coding upstream 23013 2487711 ~ 2497255 (-)
CI01000050_02503125_02509915 NA coding upstream 37894 2502592 ~ 2510038 (-)
CI01000050_02528520_02596972 TCF7L1B, TCF7L1, TCF7L1A coding upstream 63822 2528520 ~ 2596972 (-)
CI01000050_02752537_02755836 COX5B.1, COX5B1, COX5B coding upstream 287334 2752032 ~ 2755922 (-)
CI01000050_02785728_02797909 PHYHIP coding upstream 320858 2785556 ~ 2797909 (-)
G214036 NA non-coding downstream 13801 2448070 ~ 2448375 (-)
G214035 NA non-coding downstream 20335 2441547 ~ 2441841 (-)
G214034 NA non-coding downstream 21017 2440944 ~ 2441159 (-)
G214009 NA non-coding downstream 36707 2423605 ~ 2425469 (-)
G214007 NA non-coding downstream 39103 2422791 ~ 2423073 (-)
G214048 NA non-coding upstream 55592 2520290 ~ 2520715 (-)
G214054 NA non-coding upstream 144107 2608805 ~ 2609018 (-)
G214069 NA non-coding upstream 270289 2734987 ~ 2747189 (-)
G214064 NA non-coding upstream 284973 2749671 ~ 2751917 (-)
G213948 NA other downstream 130860 2328513 ~ 2331316 (-)
G213704 NA other downstream 1145070 1312983 ~ 1317106 (-)
G213497 NA other downstream 1466517 983478 ~ 996539 (-)
G213429 NA other downstream 1632374 829342 ~ 829802 (-)
G214027 NA other upstream 92468 2557166 ~ 2572902 (-)
G214314 NA other upstream 948750 3413448 ~ 3424257 (-)
CI01000050_03491159_03514757 NA other upstream 1026638 3491088 ~ 3514757 (-)
G214436 NA other upstream 1061118 3525816 ~ 3589057 (-)
CI01000050_04564233_04580815 KANSL3 other upstream 2098989 4563687 ~ 4581278 (-)

Expression


Co-expression Network