G214009


Basic Information

Item Value
gene id G214009
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 2423605 ~ 2425469 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU242766
GACTGACACAGACACAAACACATAAAGCCTTTAATGAGATTTCTTTATTAAGATCTGTGGAACACAGTTTCTAGTTTATACATTTTGACATTTCTGAAGAAAGTGTGAGTGAGTGATGCTTGCCGTGCAAAACAACACTGCTCAAAAAAATTAAAGGAACACTTTGAAAACACATCAGATCTCAATGGGGAAAAATATCATGCTGGATATCTATACTGATATGGACTGGGTAATGTGTTAGGAATGAAAGGATGCCACATCGTTTGATGGAAATGAAAATTATCAACCTACAGAGGACTGAATTCAAAGACACCCTGAAAATCAAAGTGAAAAAATGATGCAGCAGGCTAGTCCATTTTGCTGAAATTTCATTGCAGCAACTCAAAATGGTACTCAGTAGTTTGTATGGTCCCCACGTGCTTGTATGCATGTCTGACAACATCGGGGCATGCTCCTAGTGAGACGGATGGTGTCCTGAGGTATTTCCTCCCAGATCTGGACCAGGGCATCACTGAGCTCCTGGACAGTCTGAGGTGCAACCTGGCGGCGTCGGATGGACCAAAACATAATGTCCCAGAGGTGTTCTATTGGATTTAGGTCAGGCGAGCGTGGGGGCCATTCAATGGTATCAATTCCTTCATCCTCCAGGAACTGCCTGCATACTCTCGCCACATGAGGCCGGGCATTGTCGTGCACCAGGAGGAACCCAGGACCCACTGCACCAGCGTAGGGTCTGACAATGGGTCCAAGGATTTCATCCCAATACCTAATGGCAGTCAGGGTGCCATTGTCTAGCCTGTAGAGGTCTGTGCGTCCCTCCATGGATATGCCTCCCCAGACCATCACTGACCCACCACCAAACCGGTCATGTTGAACGATGTTACAGGCAGCATAACGTTCTCCACGGCTTCTCCAGACCCTTTCACGTCTGTCACATGTACTCAGGGTGAACCTGCTCTCATCTGTGAAAAGCACAGGGCGCCAGTGGCGGACCTGCCAATTCTGGTGTTCAATGGTAAATGCCAATCGAGCTTCACGGTGCCGGGCAGTGAGCACAGGGCCCACTAGAGGACATCGGGCCCTCACGCCACCCTCATGAACTCTGTTTCTGATTGTTTGGGCAGAGACATTCACACCAGTGGCCTGCTGGAGGTCATTTTGTAGGGCTCTGGGAGTGCTCATCCTGTTCCTCCTTGCACAAAGGAGCAGAGACCAGTCCTGCTGATGGGTTAAGGACCTTCTACGGCCCTGTCCAGCTCTCCTAGAGTAACTGCCTGTCTCTTGGAATGCCCTTCATGCTCTTGAGACTGTGCTGGGAGACACAGCAAACCTTCTGGCAATGACACGTATTGATGTGCCATCCTGGAGGAGTTGGACTGCCTGTGCAACCTCTGTAGGGTTCAGGTATCACCTCATGCTCCCGGTAATGACACTGACCCTAGCCAAATGCAAAACTAGTGAAAAACAGTCAGGAAAGATGAGTAGGGAAAAAATGTCAGTGGCCTCCACCTGTAAAACCATTCCTGTTTTGGGGGTCGTCTCATTGTTGCCCATCTAGTGCACCTGTTGTTAATTTCATTAACACCAATGCAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242766 True 1595 lncRNA 0.49 2 2423605 2425469

Neighbor

gene id symbol gene type direction distance location
CI01000050_02407311_02413917 NA coding downstream 9688 2406440 ~ 2413917 (-)
CI01000050_02393197_02400057 LMO4A, LMO41 coding downstream 23548 2392836 ~ 2400057 (-)
CI01000050_02332320_02334175 BCL2L16 coding downstream 89430 2332179 ~ 2334175 (-)
CI01000050_02230904_02233429 NA coding downstream 190176 2228865 ~ 2233429 (-)
CI01000050_02213867_02218971 NA coding downstream 204619 2211730 ~ 2218986 (-)
CI01000050_02449354_02450013 NA coding upstream 23867 2449336 ~ 2450622 (-)
CI01000050_02488032_02496421 STAMBPB coding upstream 62242 2487711 ~ 2497255 (-)
CI01000050_02503125_02509915 NA coding upstream 77123 2502592 ~ 2510038 (-)
CI01000050_02528520_02596972 TCF7L1B, TCF7L1, TCF7L1A coding upstream 103051 2528520 ~ 2596972 (-)
CI01000050_02752537_02755836 COX5B.1, COX5B1, COX5B coding upstream 326563 2752032 ~ 2755922 (-)
G214007 NA non-coding downstream 532 2422791 ~ 2423073 (-)
G214005 NA non-coding downstream 1391 2421991 ~ 2422214 (-)
G214000 NA non-coding downstream 3818 2419576 ~ 2419787 (-)
G213998 NA non-coding downstream 4836 2418537 ~ 2418769 (-)
G213988 NA non-coding downstream 56163 2367137 ~ 2367442 (-)
G214034 NA non-coding upstream 15475 2440944 ~ 2441159 (-)
G214035 NA non-coding upstream 16078 2441547 ~ 2441841 (-)
G214036 NA non-coding upstream 22601 2448070 ~ 2448375 (-)
G214048 NA non-coding upstream 94821 2520290 ~ 2520715 (-)
G214054 NA non-coding upstream 183336 2608805 ~ 2609018 (-)
G213948 NA other downstream 92289 2328513 ~ 2331316 (-)
G213704 NA other downstream 1106499 1312983 ~ 1317106 (-)
G213497 NA other downstream 1427946 983478 ~ 996539 (-)
G213429 NA other downstream 1593803 829342 ~ 829802 (-)
G214017 NA other upstream 36707 2462176 ~ 2464698 (-)
G214027 NA other upstream 131697 2557166 ~ 2572902 (-)
G214314 NA other upstream 987979 3413448 ~ 3424257 (-)
CI01000050_03491159_03514757 NA other upstream 1065867 3491088 ~ 3514757 (-)
G214436 NA other upstream 1100347 3525816 ~ 3589057 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G105529 NA non-coding NC_048566.1 CM023220.2 2016077 ~ 2018117 (+)
rainbow trout (Oncorhynchus mykiss) G2132971 NA unknown NC_048592.1 CM023246.2 36224213 ~ 36225379 (-)
eurasian perch (Perca fluviatilis) G127165 LOC100691947,LOC102776592,LOC101469272,LOC102213137 unknown NC_053123.1 CM020920.1 26116988 ~ 26129879 (+)
striped catfish (Pangasianodon hypophthalmus) G100439 LOC107586879,LOC107732307 non-coding NC_047600.1 CM018546.1 16816348 ~ 16819150 (-)
bowfin (Amia calva) G136172 NA non-coding CM030138.1 CM030138.1 16519886 ~ 16522448 (-)
bowfin (Amia calva) G95472 NA unknown CM030132.1 CM030132.1 2136420 ~ 2137452 (-)