CI01000050_02393197_02400057 (LMO4A, LMO41)


Basic Information

Item Value
gene id CI01000050_02393197_02400057
gene name LMO4A, LMO41
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 2392836 ~ 2400057 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_02393197_02400057.mRNA
CCGTAGCTATGGTGAACAGCCAGGTCGCAGGCGGCGCGTGCGTGTCCAGATCGTGCGCGGGCTGTGGGGGTCGAATCGCTGACCGTTTCCTGCTCTTCTCCATGGAGCGCTACTGGCACACGCGCTGCCTCAAGTGCTCGTGCTGTCAGGCTCAGCTGGGAGAGATCGGATCCACCTGCTACAGCAAAGGAGGCATGATCCTCTGCAGAACAGACTACATCAGGTTGTTTGGGCACACAGGGGCTTGCAGCGCATGCGGTCAGTCCATTCCCGCCAGTGAAATGGTCATGCGGGCACAGGGCAACGTCTACCACCTCAAGTGCTTCTCCTGTGCGACGTGCAGAAACCAGTTGGTCCCCGGTTTGCTGAAGGGCTCCCCGTCGTCTTCGCCCCTTCCTCTCTCTATTTACCCTCATCACTGCCATCCCCCAGACACTGATCCTTTGAAGCACTTACAGTTTTAAAGCCTAAATTTACAGACTTAAGAGTTTCTTTGAGATGGAGAACGAGTTTGGGATGAGAGCGATGGAAACATTTGTGTATCTGACATCATATCAAACTGTGGTGGATTCTGCAGTATCTCTCATGGTGATGTTGTGGCTTTCTTGCCCCCTCACCCCCTGAAAACAGAAGTAACACGTCTATTTTCTCACAGGATATCCTGTTTGTCTCACATCTAACCTCACAGAGAAGGCTTCATCTGACAGCAATGTACACTTTAAAGTCAACATGAAACTGCATTCACAACCTATTTTTCTTGCATGTGTCTGATCTAAACAGGATATTCATTAAGAACAAATGTAGGGCAGGACTTTAGAAAATAAA

Function

symbol description
lmo4a Predicted to enable metal ion binding activity. Acts upstream of or within embryonic camera-type eye development and forebrain development. Is expressed in several structures, including brain; cardiovascular system; germ ring; mesoderm; and neural keel. Orthologous to human LMO4 (LIM domain only 4).

NR:

description
LIM domain transcription factor LMO4

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_02393197_02400057.mRNA True 825 mRNA 0.50 4 2392836 2400057

Neighbor

gene id symbol gene type direction distance location
CI01000050_02332320_02334175 BCL2L16 coding downstream 58661 2332179 ~ 2334175 (-)
CI01000050_02230904_02233429 NA coding downstream 159407 2228865 ~ 2233429 (-)
CI01000050_02213867_02218971 NA coding downstream 173850 2211730 ~ 2218986 (-)
CI01000050_02187334_02202572 NA coding downstream 189698 2187311 ~ 2203138 (-)
CI01000050_02153699_02173737 NA coding downstream 218501 2153409 ~ 2174335 (-)
CI01000050_02407311_02413917 NA coding upstream 6383 2406440 ~ 2413917 (-)
CI01000050_02449354_02450013 NA coding upstream 49279 2449336 ~ 2450622 (-)
CI01000050_02488032_02496421 STAMBPB coding upstream 87654 2487711 ~ 2497255 (-)
CI01000050_02503125_02509915 NA coding upstream 102535 2502592 ~ 2510038 (-)
CI01000050_02528520_02596972 TCF7L1B, TCF7L1, TCF7L1A coding upstream 128463 2528520 ~ 2596972 (-)
G213988 NA non-coding downstream 25394 2367137 ~ 2367442 (-)
G213983 NA non-coding downstream 36647 2355856 ~ 2356189 (-)
G213979 NA non-coding downstream 53085 2339494 ~ 2339751 (-)
G213978 NA non-coding downstream 54412 2338189 ~ 2338424 (-)
G213943 NA non-coding downstream 145672 2246856 ~ 2247164 (-)
G213998 NA non-coding upstream 18480 2418537 ~ 2418769 (-)
G214000 NA non-coding upstream 19519 2419576 ~ 2419787 (-)
G214005 NA non-coding upstream 21934 2421991 ~ 2422214 (-)
G214007 NA non-coding upstream 22734 2422791 ~ 2423073 (-)
G214009 NA non-coding upstream 23548 2423605 ~ 2425469 (-)
G213948 NA other downstream 61520 2328513 ~ 2331316 (-)
G213704 NA other downstream 1075730 1312983 ~ 1317106 (-)
G213497 NA other downstream 1397177 983478 ~ 996539 (-)
G213429 NA other downstream 1563034 829342 ~ 829802 (-)
G214017 NA other upstream 62119 2462176 ~ 2464698 (-)
G214027 NA other upstream 157109 2557166 ~ 2572902 (-)
G214314 NA other upstream 1013391 3413448 ~ 3424257 (-)
CI01000050_03491159_03514757 NA other upstream 1091279 3491088 ~ 3514757 (-)
G214436 NA other upstream 1125759 3525816 ~ 3589057 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020173 lmo41,LOC105911081,LOC108260376,LOC106585438 coding CM030127.1 CM030127.1 12448768 ~ 12452785 (+)