CI01000050_02230904_02233429


Basic Information

Item Value
gene id CI01000050_02230904_02233429
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 2228865 ~ 2233429 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU242653
AGACAGCTGACAGTTGACGTTTTAAAGTTTTATGACTTTCTATTGGGTTTTGACATGCTTCACTGCCGGCGACGACGGGACACTGGACCAAAATATGCTCTTCTCTGATCATCCCTCTGGTTCTGGTTTTTCTAGTTCTGATCACAGCTGGACTCTTATTACTGTTTTTCTGTAAGAAGCGTCAGTCTCAAGGCGGTGATTCGTCATCTCAGACTGGACCAGGAAAACATGAAGTGGTTTCTCACACTGGTTGTGATTATGAGGAGATTAAAGACACTCACCAACAATTACCCACAAACCCCTCTGATTCTTCTAACACTGTTTATGTCACTGCCCAATTACCCACAAGCCTCTCTGATTCTGCTGCTACAGTTCAGAAAGCCACTGGTGACTCTCAGTGCTGCATCACATCTGCTGAGGATCTGAATTACGCAGTGGTGAATTTCCACAAGAAATCTGACTGTCCTGACAGTGTCAGTATCAGGAATAATCAGGATTACAGTGAATACGCTGCTGTCAATCATCTCACTGCTTGATGAACAACAGCAGAGAATATAAATGAGCTGAATGTTTTGTCACCTTGTCTTTGGTATTAAGTTTGTGTGTTTGGTGTTTTTTGTTAGTCTTCAGTGATGCTCCTTTTCCTTATATTTTAGTCAGTCTTGTGAATCAGACTTTTGACTGTTGGCATGAAGTCTGATGAATGTTTAAATGACAGCGCAGTGTTTTGTTCTGCAGATGACAATGAAAGAAATGATCAGAAGCTTTTGGTCAGAGTTTGATGTAAATAACTACTGAATGTTTCAGACAAATTGTAAAATTAAAGCAGAATATACAGCTGTGCTCAATTTTATAAAGCTAACAAACTTTAGCACATGCAGCAACTGTTGTTTTTTCCCAGTTCTCATTTTAATAGACTTAACCTGATAACTTAAAAAAAATCCAGATGAGGTTGTGATATTGTTTTCAAATGTGATATGCATGTGTGATATGCAATAAAGACGAAGGCACTATAAAAGTGGCTGTATGCGTCATGTCTTTCTGCCCATCTTGTGCGACATATGTCAATCAGTGGTTTCCTCTGTCCCATAGAGTGTGCATCCTTATGTACAACCTCCATGAGTAGTTGTTCCCTCTTTGGGCTGTAGGTGAAGAATATGATGGTAGACTTCATCTTGTCAATCATGTTGCGCACAACTGGAAGAGCACAGGAGCGTGCAATGACACGTTACAGTGCATGTACACTGCTTTAGGTGCGTCCTTCTTGATCAGAGCCTGGACACCAACATTTTCACTGCTCATGTTGCTGGCACCATCATACCCCTGGCCTCTGCAATCACCAATCTCTATGTTGAGGTGACTCAGCACATCCTTAATTGCGGTTGCAATGTGGCTGCCTGTGATTCGTGGCAGAGAGCAAATCTCCAGCAATTCCTCCCTGATATTTAGGTCTTTTTCCACAAACCTTACACAGAATGGCATCAGCTCTACATTATGGGATGTCACCTCATCAGCCATGACTGTATAGATCTGTGCATTTTTGACCTCGTCCACAATCTGGGCCTGAATAATTCGCTTTCCTATCACGTCAATCATCTGATTTTGGGTTTGGGGCGAGAGGTAGGTGGCATTTCTGAGCTTTGGCTGTTCCATGTGCTGCTTCAGCTTCTCATCATGGTTTGCAAGTAGTTTCATCAGGGCCAAAAAGTTTCCAGGATTGCCAGTAGAATTTTGCTTCTCAGATGTACCTCTAAGTGCAATGCACTGGCGACCACAGTATAGTACACTCTCTGCTACAGACTAGAGTATGTGCCTGTTTTCTTTGATATTGGCTTTCTTCTTACTGTCCAGAAGGACAGAGATTTGGGTCTGAGGTTTTTCAACTGACTGGAGAAACAACTGAGCATTTTCAACTGCAGCCAAGTGATATGCTTTTGTTGAATGGCTGCCTATTACCATGCTTTTCTTGTGCCATTTTGTGAATGGGGCATTTACTAACACTCCCATTTGTTTTCTCTCTTTGGCATTGACCAACAGGGCACAGCACACACAGAAGTGACCATCAAGGTTGGAACCATACACCAACCACCAGCCATATTCCTCCAACCACCCGAGTTTGAATGCCCTTTTGCAGCCAGCAAGGAATTGTGTTGGAAAAATGAAGTTTTTAGAAGGCTTGTTGTGGTTCCTGAGTAAATGGTATTTCTGGCCATCAGACATCTTACGCACACTCTCTAAGATTTCTTCAACCGATTTTGTGGCCTGAATGAAAAATCCTATATCATTAAATATCTCCTTCTCCTGACCTTCCATGACAGGGTGTGGGTCCTCTTGACCTTCGCTGAGCTGTCGCATTTCACCTTGACCTTCGCTGAGCTGTCGCATTTCACCTTGACCTTCGCTGAGCTGTCGCATTTCACCTTGACCTTCGCTGAGCTGTCGCGTTTCATTATCTGAAATACACTTGTATATTATTTGGCATGGATAACCATAACTTCCCTACAAAAAAAATCACCACAAAGTTATATGTTCCTGTTATCCAGTAACAGTTGGCTTCGTACTTTTTGGAAGACAAACAAGGTACATTTAAAAAAAAAAAATATTTTTTTATATTAATAACAAAAAAATAACTATAGTTTCACATGATTTATATGTATGATTAGAAGCAGTTTA
>CI01000050_02230904_02233429.mRNA
GTGTCGTGAGCTCCATGAATGTGACAGGATATTCAGGAGGAGGAGTCAGGATCACATGCAAATATGAGACAAAAAATACGGCAAACTCTTTTTGTCGAGGTGATCAGAGGTCCACATGCTCTGACCTCATCGAGACTGAGACTAAAGATAAATGGTTTAATTCTGGAAGATTCTCTCTGTATGACAACACAAGTTCAGCAGTCTTGAAAGTGACCATCAGAAATCTGAGTGAAGAGGATTCTGGGACGTACTACTGTAGAGCAAAAGATTCCTACACTGAAGTGAATCTGAAGGTTATAACAGAGCTGAATGTGAACGACTCTGGAGAATATAAGATTACAGTCAAAGTTTCTGAAGACTACAGTGTCTTCTCTCAGTTTAATCTGGACATCAGAGACGATGATTGTTGTGTGAAGAGCATCAGTCTATCAGCTGCTGCAGGAGCATCTGTGAACATCAGCTGCAAATACCCACAATCCCATAAAAGAGATGTGAAGTTTCTCTGCTGGAGATCTGGAGATAATCTCTGTGCTGAAGAGACGTCTGTGAAGGAGAGCAGAAGATGGATCCATGAGGGAAAGATCCAGCTGTATGATGACAGAGAAAAGCAGCTCCTGACGGGAAGAATCAGTCATGTGACTGAACAACATTCAGAATACTGGTGTGGAGTTCAGTCTGATCAAAGACACAAGAGTTTCATCACACAAGTCCAGATCAGCGTTACAGCATCTGCAAATGGCTGAAGATCTTGTGGTTTGAAAGCGTTTAGTGTTTAGTTCTCTCTGTGTCTGTTAATCTCGGATCACTGCAGTGTCTGGTGTTGCAGCATTAGTGTGGTCATTTGGATGGAGTAGAAGTGCAGGTTTTAGTGCTGTAGCACAACAGCGCAAGTAGTTAACATTAGTTAATTCATTAGATAACATGAACTAATCATGAACAAAATAGCCTTAATGTTTTAAGGTTAATGTACTGTACATATTTACATTAGTGTATGTAGCAGTTGACACACTAAGGGTGAACATTTCTAACTCACCATCTTACCCTAAAGCTAAAAATGCCATTGTGTACCTTATCAGAATTATTTATTAATAAGGCATTGATTTGGGCTGTAAACATAATTCTGAAGTGGAAACCATCTGAACATTAACAGACATGTTGTTCATGTTTATATGCACTTTACTATCATTACTTACATTCAACAAAGCATTCATTAATGGAATTTGTGAACTTTATTGTAAAGTGTACACTATTTCAACATTAACTGATGTGTTATTAACATTTGTAGACCCTGTATTAACATGACTTACCATTAACAAAGCATTCATTAATGGAATTTGTGAACTTTATTGATTTTACTGAACCTTAAATGAGTGAAAGCCATTCATCAAATACATTTTCAGAACCTTTATTACCAGCCTGGTCTCATTGTTAATACATAGGTATTAATACATAACTTTCAGACACCAAAACGTACATTTTTGTACATTTATAAAGGTGCTGATACGTACAATATTGATGTGTTTATAGCACTAAAACATAAAAATACTTTTTCAGCGAAAAAACGTAAAATATTTACGAATCTTTCATGTCATAAAGATATATGTATAATTTCCCTTTTATCGTTTAGTAGATCAATGTAAGATCCCTAAACCCCACCCCAAACCTAAACATACCCATTTTATACAGAATGTTAAAAGAATAAAACATAATGGACATAAATGTTTAGGAAAATGACAATTTTAGTAAAAAATATAACATTAAAACGATATTTTGAGCAACTAATCCTACACCTAGCCTACCCCTAAACCTACCCATAACCATTCCTTAAAACTACTGTTATAAATAAAAGAATAACAGACAAACAAGCGTAATCACAATAATTTATTTCTTGCGAAAATGTCAAAAGTGGTACCAGAAGTAGTTCAAATGACGATGAGTTGCAGTCACAGTTCTCTCTTGCGGTAATAGTTTTTATAGGGTACAGAGCAGAATTTAACTTATTAATCCATGAAATATGAACCCAAGAGGCGACACTGTAGCTGTGTCCCAATTCAGGGGCTGCGCGCTTCGGAGTGCATGAAAGGGGTGGGGCTTTGGAGTGGAGGGTTGCCAGGTCTGCGCAACAAAACCATCCCAAAAGTAGCGTAATCACAGCACAAGTGTAAAAGTATCCCAATCCCAGACGTGGCAACAATGAGCCGAGCGTCGTTACATGGCTAGCGGATGTGTGACAGACAGCTGACAGTTGACGTTTTAAAGTTTTATGACTTTCTATTGGGTTTTGACATGCTTCACTGCCGGCGACGACGGGACACTGGACCAAAATATGTATGGTTAAACTATGTAATGTTAGTTTTATATCGTTAGCAACTAGTTAACCTTGTTTGTTTTTTATGTTAAATGAAACGTTAACTGTGAAAATATATACATTCATATTTATACATTTACTCTGTATTTAAGCTGTGTTTACGTCTAAATTTAAAGTACAGTACTTTAGGATTTTATTCAACTGCACTCCATCTCAGAGACAAATATTGTATTTATGAAAAACTGACGTTTTGGACATCATGGATATTACAGTTTGATTTAGATATTACATATTGGTGAAACCGGGGCATTGCTTTATACGAGCGTATGGGACGCTCAGGGGGTTCAGGTGTAGTGTACCAAAGATGGGGTGTGTGTGTTTCCGGTAAGAGAAACAGGAGAGGGAATCCCAGTTTAACTTATTTAATCAAAGGAGGTTTGTATATGTTACTACACACATGTGATCTATAATAAA

Function

NR:

description
hypothetical protein cypCar_00043954

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242653 True 96 lncRNA 0.41 1 2229319 2229414
CI01000050_02230904_02233429.mRNA False 2782 mRNA 0.37 4 2228865 2233429

Neighbor

gene id symbol gene type direction distance location
CI01000050_02213867_02218971 NA coding downstream 9879 2211730 ~ 2218986 (-)
CI01000050_02187334_02202572 NA coding downstream 25727 2187311 ~ 2203138 (-)
CI01000050_02153699_02173737 NA coding downstream 54530 2153409 ~ 2174335 (-)
CI01000050_02146025_02148567 NA coding downstream 80253 2145941 ~ 2148612 (-)
CI01000050_02057680_02112564 NA coding downstream 116128 2056980 ~ 2112737 (-)
CI01000050_02332320_02334175 BCL2L16 coding upstream 98750 2332179 ~ 2334175 (-)
CI01000050_02393197_02400057 LMO4A, LMO41 coding upstream 159407 2392836 ~ 2400057 (-)
CI01000050_02407311_02413917 NA coding upstream 173011 2406440 ~ 2413917 (-)
CI01000050_02449354_02450013 NA coding upstream 215907 2449336 ~ 2450622 (-)
CI01000050_02488032_02496421 STAMBPB coding upstream 254282 2487711 ~ 2497255 (-)
G213934 NA non-coding downstream 20639 2207786 ~ 2208226 (-)
G213931 NA non-coding downstream 24995 2203656 ~ 2203870 (-)
G213905 NA non-coding downstream 104119 2119359 ~ 2124746 (-)
G213893 NA non-coding downstream 127349 2101197 ~ 2101516 (-)
G213943 NA non-coding upstream 13427 2246856 ~ 2247164 (-)
G213978 NA non-coding upstream 104760 2338189 ~ 2338424 (-)
G213979 NA non-coding upstream 106065 2339494 ~ 2339751 (-)
G213983 NA non-coding upstream 122427 2355856 ~ 2356189 (-)
G213988 NA non-coding upstream 133708 2367137 ~ 2367442 (-)
G213704 NA other downstream 911759 1312983 ~ 1317106 (-)
G213497 NA other downstream 1233206 983478 ~ 996539 (-)
G213429 NA other downstream 1399063 829342 ~ 829802 (-)
G213174 NA other downstream 1975803 235551 ~ 253062 (-)
G213171 NA other downstream 2210884 16080 ~ 17981 (-)
G213948 NA other upstream 95084 2328513 ~ 2331316 (-)
G214017 NA other upstream 228747 2462176 ~ 2464698 (-)
G214027 NA other upstream 323737 2557166 ~ 2572902 (-)
G214314 NA other upstream 1180019 3413448 ~ 3424257 (-)
CI01000050_03491159_03514757 NA other upstream 1257907 3491088 ~ 3514757 (-)

Expression


Co-expression Network