G216408


Basic Information

Item Value
gene id G216408
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 6356017 ~ 6356511 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU245491
AATTATTAGAATATTTAATTTCAAGTTCTATTAAATTACCATTCTCAGGATATAAATACTGGGTTTAGGTCAGTAATCCCAACAGCAGTCATGGGGAAGTCTGCTGACTTGACAGTTGTCCAGAAGAGGATCATCAAGACCCTCTACAATGAGGGTAAGCCACAGAGGGTCATAGCTGAAAGAGCTTGCTGTTCGCAGAGTGCTGTGCCAAAGCATATTCATGGAAAGTTGACTGGAAGGAAAAAGTGTGGTAGGAAAAGGTGTACAAGTGAAAGGAATGACTGCAGGCTTGAGGAGATTGTCAGGCGAAGCCGATTTAAGAACTTAGGAGAGGTTCAAAAGGAGTGGACTGAAGCTAGAGTCAGTGCATCAAGAGCCACCACACACAGACGTCTTCGGGAAATGGGCTACAACTGTCACATTCCACGTACCAAGGCACTTCTGAACCAAAGACAACATCAGAAGCGTCTTACCTGGGCTAAGGAGAAAAATAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU245491 True 495 TUCP 0.44 1 6356017 6356511

Neighbor

gene id symbol gene type direction distance location
CI01000050_06320386_06342648 CLCN6 coding downstream 13369 6319698 ~ 6342648 (-)
CI01000050_05851079_05852014 NA coding downstream 503953 5850987 ~ 5852064 (-)
CI01000050_05800641_05808346 TPRG1L coding downstream 547671 5800004 ~ 5808346 (-)
CI01000050_05766242_05770223 NA coding downstream 585794 5765796 ~ 5770223 (-)
CI01000050_05728696_05760342 TP73 coding downstream 595213 5728465 ~ 5760804 (-)
CI01000050_06359307_06399573 NA coding upstream 2721 6359232 ~ 6399597 (-)
CI01000050_06401583_06407303 PEX10 coding upstream 44880 6401391 ~ 6407323 (-)
CI01000050_06638872_06648965 KANK3 coding upstream 282361 6638872 ~ 6649572 (-)
CI01000050_06666826_06671632 NA coding upstream 310203 6666714 ~ 6671891 (-)
CI01000050_06706062_06724379 NA coding upstream 349546 6706057 ~ 6724399 (-)
G216404 NA non-coding downstream 47292 6307534 ~ 6308725 (-)
G216379 NA non-coding downstream 91888 6263908 ~ 6264129 (-)
G216254 NA non-coding downstream 348933 6003702 ~ 6007084 (-)
G216213 NA non-coding downstream 406176 5949542 ~ 5949841 (-)
G216212 NA non-coding downstream 409511 5946243 ~ 5946506 (-)
G216230 NA non-coding upstream 1994 6358505 ~ 6358840 (-)
G216432 NA non-coding upstream 77532 6434043 ~ 6436808 (-)
G216445 NA non-coding upstream 116578 6473089 ~ 6473301 (-)
G216449 NA non-coding upstream 125494 6482005 ~ 6482413 (-)
G216450 NA non-coding upstream 126980 6483491 ~ 6483703 (-)
G216093 NA other downstream 803914 5489557 ~ 5552103 (-)
G215935 NA other downstream 1282908 5048916 ~ 5073109 (-)
CI01000050_04564233_04580815 KANSL3 other downstream 1743125 4563687 ~ 4581278 (-)
G214436 NA other downstream 2766960 3525816 ~ 3589057 (-)
CI01000050_03491159_03514757 NA other downstream 2845226 3491088 ~ 3514757 (-)
G216931 NA other upstream 807584 7164095 ~ 7165401 (-)

Expression


Co-expression Network