CI01000050_06359307_06399573


Basic Information

Item Value
gene id CI01000050_06359307_06399573
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 6359232 ~ 6399597 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_06359307_06399573.mRNA
AGCAAAATGTGAATAACAAGCAACATGCCGTTGCCTGAGGAAAACGCAGATGAGCCTCCATATGCTCAGAAAGACGGTACAACTTCATACAAGAACACACCGCTGAGCAAACTTCCCTCTATTCTCACGTTTGGTTCTGAGCCCTTCATTCAGCAAACACACTTCAAGAGGGGAACAGACTGCACTTTTGATCTTCCTCACCACAAGAACATTTATTCGGTTTCAGAGAGTGCAAGTGGCTCAAAATATGCCAGAAGAGATACAACACTAAGAGATGCTTCAGCCCTCATATGTTGTGATACAGCAGCCAAGCATAAGTGTGAGCAATGGAAGACCCCAGAGAGGGATTTTACAGAGTATTCCTCATTATCCACAATTTCAAAGAAAGACAGCCCGCCGACCTGCTTTAATTCTGCAGACATTGCTTATAAACCCCAAAAGGAAGCACTCGCTTTTCAAAGACAAGATGAAAGGCTTTCATCCTGTACCTTTCATGAGCTTCTTGAGTCCTCGTGGATGTCTGCAAACTTGCATTGCTCGATGCTACACTTCAACTCAACTGAACAAGCAGCCTCTTTTGTGGAACATCAAACTCCCAACTTATCTGTATCCACCTCAGCGGTTTCCTCTCTCACAATACCTGTCGTCACGGAAAGTGAAAGGCACAGTAGCTACATTCCAAGAGATATCAAAAGACAACCAAGAAATGAGCAGTTTCAGTGCTGTAATACAAGATTCAGCTCTAATCATGTCCCTAGAGTATCTATACAACCACCAAACAAATCTGGACAAAATGAAGATTTTGTCAGAGACAGAAGACCTGATGGAGACAAATTGGCTTTTGATGGCCCTACTGAGATTAACCCTCATAAAAGGCTTGAAATGCAGGAGAATTTGAGTCAAATGCACCCACTGGTGATTCATAGAGAGGATATAAAGAACCATACGCAAAACATGCAAAGAGTTTATCTTAAAGAAGCATACAAATGTCCTCCAGGACTGGCAGGAAGTAGGAATGAACTAGTGTCTATTGATGGACAATATTTTAGATCTCATCAACACTCACCTTTTGCGAAGTGTAAAGCCGTGGCTGCAACAGAAGCTCGGATTTCTGCTCAGCCTGATGTGGCACCAGGGGCTTATGATGACTTTGATGAAAAGAAAATAGAAGAAAGGTGTGAAGACCTGTATAGGTTCCATCTGCGGTTGCGCTGTCTGAGATTGTGGTCCAAAAGACTCAGGTTACTCTCTCAAGCCTGCTGTCATGACAGAAGACGGGTTTTAAGCAAAGCTCTGTATGTTCTGAGATGGGCCGCAAAGATGCATTGTGCTCAAAATGATGCAGTGGAGAGGAGGAGATGTAATTTCCTGCTCTATCAGAGTTTTTACCAGTGGAAGAATCACTATGAGAGCAGACACCTGGATAACTCATTACACAATGAGCGCAACACAGATGCTTTGAGAAAACGACTCATTCAGCCCGGAAGAACTTTGGTTCTGATGACCACATGTTCCACCTGGAGGAACATGCATGAGCTCAGAACAGCTGTGATTCATTATCATCTATCTGTACTTTATAAGCACTGGCTGCTGTGGAGGCAGGCGTGTTTAAAGCAATTCTCTAGGAGACAACAGGAGTGGTGGTCATGTTCGTGGTGGGGCAGACGACTCCAGAGCAAAGTCTGGACCCTGTGGATAATAACCTGGCAGAGAAAACAGCTAGCCACAGATCAGTACAGACGCGCCCTGCACTCCTGGCATTGCTACGTTCAGAAGACAAAACTAACACGTTTGAGTACCAGAGTCCCATGGGTGCTTTCCAGACAGATGTTAGCAGGAAGTGGAGAAATGTCACAGGAAGGATGCAGGAAACAAGGAGATGTCTGGAGAGAATGCGCCCCCTGCAGGATAAAGGTGTTTATCGGTGTGGAGAACACTAGTCCAACGCAGTGCATTGCTTCTGCATTACTGTTATCACAGAAAGGCTCTGACACTCAAGACATGCTTACAGCAATGGAGCAGATCTCTACAGCTACACTGTCTGCAGAAGGATTTCCTCATCCACCAGTTTCATACAAGACAGAAAAACACAGATCAGTTCAAGATAGAGCTGTTCAGCGGGCTTTTCTTCTGGAGTGGTACAGACACACTCAGGCTGTTTTCTCTGATGGAGTTCTGCTCTTCACAGCCAGACTGGCTCATCTTTATCCATCCTCCTCTTCCTCATCCTGCTCTGATCCTCTTATGTCCACTGCTGTACCTCAGGTTTCTCTGGTAGAATGTGAAAACTGCACAGCAGAAGATGATAGTTTGGAGCGAAGTGTGTTGACACACAGAGAGCAACACTGCCCTCTACTTGCCACAGAATCACAGCACAGCCACATGTCATGGACTGTGTCAGAGGAACACAGATCTCTGCTGTCAGTTATCAGTACAATTTCTGAGGAACATAAAGACCCAGGAGATGAGAGAATGGTTTATAGTTGTTTCTGGGGCTCCTATGATCATTGCAGACTTCGCAGATCAAAGGTTGTGCTACTAAGAGCCCTCGGCAGGATGATGCATCCTGATTTGAGTCTGGCTTTTTCCCAGTGGAGGGGTCTAGTGCACACTAACAGAGATATGAGGCTACAGGCGGATCTCTGTAGAAAAAGCAGGAGACAAATGCTGCTCTATAGTAACTATGCCAACTTTGAAAAAATGCTGGATGTGCACTGTGACAAGTTCACGGCCGTGGTGCCATACTGTGAGCAGCAGAATTGTGCTGTTGAATGGATGAAGAGCAAAGCAGAGAGACACAGACTGAACTTGAGCTTCTCCACGTGGGTAACGTGTAAGCCAGCAGCAGACTGCCAGAGCCGTTTATATTCGCACGCTACAGAACAGTCCTTCATCTCCGCTGAATCTCCACTGAACCTCCGCCACAATCTGCTTGCCCAAGGAGCGATCCCTCTCCACCCGACAACCCTGTCGAGCCCCCGTCTTCATCTCGGGGGTGTTGGATCACACGATCCGCTCCACACATGCCAAGATGCAGAGGCCTACCCTCGTCATCCACCTGCGATGCCAGCTACCCACCAACCACTCAAACATTACCTTTACCTCCCACGGTCTCTAACCCATTTTCCTATCCATGGCTTCCAGCTCCAGGAGCAGACCCTAACAGTGTTTTTGGCATGGCTGAGTTGTGTGCAGGTCTGTAAGCAGAGGCAGGCATCAGCTCTGTCCTTTTCACACTACAGACTCTTGCGAGTCTGTTTCTGTCAGTGGAGATTCATCTGTGCTCAGCAGCAGCTCGCCAACAGCAAAGTACAACACAGATTCCACCTGAGAGTCAAAGCCATCTTACAGCAGTGGAGAAAACATGCACAATATAGGGCTCATCGACAGGCTCTTCTATGTGAGTATGATGAGAGGAGGAAGATTTTCATGAAGAGAAGAACATATCGAATGTGGAGCCAAGCAGTGGAATATTTCAGAAGATCTCAGCATTATCACCAAAGAGCCTTAAAATACAGATATTTCTTTCAGTGGCTTCATGAGTTCAGGCATCAGTCAGAGCTGCTGTGTATAAGCAGAGAGCTGGAGGAGGTCCTGACGCAGAGACTACAGCGTAGAGCTTTCTGTCTCTGGCAGTTCAAACTCAGCCATGTACATTCTCACATACTTCACATCACGAGTCTCATCCACTGCTGGGAAGACACTCGGCATCTCCGTCTTTATCTGTGTGTGTGGAGGGAGAGACTTGTTGAGAGGAAGAGGGCCCGACTGACGATGCATCAGTGGAGACAGCACATCTCACGGGCCAGAAAGCAGAGAAACATCGTGTGGAGGATGAAAAACATGTTCCTGTGCTGGAAAGCAGCTTTTACACAGAGGGTCAGGAGCAGAGATCACTGTACACAGAGACAGCAGAGGAGGGTTCTGCTGGCATGGCACAAACAAACAGTATCAGCCCAGAGACTGAGGTACAGAGAGGCCTGGTTCCAGTACAGCAGTGAGATGAGACTGCTGGCTGCTGTACTCATACAGTGGAGAAGAGCTCTCATCCAGGGTCAACAGAGGAAGTGTGCAATGGAGAGCCAGCTCATCGTCTATCAGAGTAGGATGTTCAAGCGTTGGACACATAGCAGGGATTTGTTGAAAGTAGCAGACATGTTTTGTGTTAAGAAGGAAAGAAGTGAAGCCCGGTTAGCTCTAACGACGTGGTCACTGTGGGCCAAAGAACATAAAGCCCAGAGGCAGATGGGGGAGGCTGTGAGTCTCTGGCTAGAGGGCAGAGGAGTATCTAGAACTTTCCATCATTGGGTCAGAGTGTACCAACAATACCAGAAAGCTTCCCAACACAGAAAGACACAGTTTTCACACAGAGCTGTGAAGGGAAGAGTGCATGGACTGACCCATCTGTACTGGACCTGTTGGAAAAACCAAACTGAAGCATCATTGCTGTACACACAACAATATGAGCGCTCTGTGCTGCAAAGAGCCTGGCTTATCTGGAGAAAGAGACATATCAGGAACAGAGTGTCTGCTGATTACTCATCCAACTTTAACAACATGCTATTGGCACAGAAAGAGCACTCAGTGGAAGAACCAAGACTGTTTCAATTTCTCAGTGGTTTTTGGAAAATGGCACTTAGGTTGCCATGGTACTAAACCACTTTTATATACTCTATGTATTTAAATCAAGTATTGGTGTAGAACATTTTCATGCCGCCTTTGTCCAATAAA

Function

NR:

description
uncharacterized protein LOC101884100

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_06359307_06399573.mRNA True 4731 mRNA 0.47 24 6359232 6399597

Neighbor

gene id symbol gene type direction distance location
CI01000050_06320386_06342648 CLCN6 coding downstream 16584 6319698 ~ 6342648 (-)
CI01000050_05851079_05852014 NA coding downstream 507168 5850987 ~ 5852064 (-)
CI01000050_05800641_05808346 TPRG1L coding downstream 550886 5800004 ~ 5808346 (-)
CI01000050_05766242_05770223 NA coding downstream 589009 5765796 ~ 5770223 (-)
CI01000050_05728696_05760342 TP73 coding downstream 598428 5728465 ~ 5760804 (-)
CI01000050_06401583_06407303 PEX10 coding upstream 1794 6401391 ~ 6407323 (-)
CI01000050_06638872_06648965 KANK3 coding upstream 239275 6638872 ~ 6649572 (-)
CI01000050_06666826_06671632 NA coding upstream 267117 6666714 ~ 6671891 (-)
CI01000050_06706062_06724379 NA coding upstream 306460 6706057 ~ 6724399 (-)
CI01000050_06729717_06733879 NA coding upstream 328399 6727996 ~ 6734420 (-)
G216230 NA non-coding downstream 392 6358505 ~ 6358840 (-)
G216404 NA non-coding downstream 50507 6307534 ~ 6308725 (-)
G216379 NA non-coding downstream 95103 6263908 ~ 6264129 (-)
G216254 NA non-coding downstream 352148 6003702 ~ 6007084 (-)
G216213 NA non-coding downstream 409391 5949542 ~ 5949841 (-)
G216432 NA non-coding upstream 34446 6434043 ~ 6436808 (-)
G216445 NA non-coding upstream 73492 6473089 ~ 6473301 (-)
G216449 NA non-coding upstream 82408 6482005 ~ 6482413 (-)
G216450 NA non-coding upstream 83894 6483491 ~ 6483703 (-)
G216454 NA non-coding upstream 88177 6487774 ~ 6488003 (-)
G216408 NA other downstream 2721 6356017 ~ 6356511 (-)
G216093 NA other downstream 807129 5489557 ~ 5552103 (-)
G215935 NA other downstream 1286123 5048916 ~ 5073109 (-)
CI01000050_04564233_04580815 KANSL3 other downstream 1746340 4563687 ~ 4581278 (-)
G214436 NA other downstream 2770175 3525816 ~ 3589057 (-)
G216931 NA other upstream 764498 7164095 ~ 7165401 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036728 NA non-coding NC_007119.7 CM002892.2 47302371 ~ 47315226 (-)