CI01000050_06638872_06648965 (KANK3)


Basic Information

Item Value
gene id CI01000050_06638872_06648965
gene name KANK3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 6638872 ~ 6649572 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_06638872_06648965.mRNA
ATACATAGAACGGCACATAGACCATCTAAGCATTAACAGTAATGCATAACCCAAATATACTACAAATTAAAAAGATGATGGCAAACAATAAGGCACACAATTTACTTGTTATGAGAGTTAAAGCTGTATTTTTGTCAGCCAAATCTTGTTTTGAAATTACCCATTAAGTTCGACTGGACAGCCAAGGTAATCACAAAAACCTCAGGACTATGTGTGCAGTCTAAAAACAACTAATTTCTATGACATAAGACCAGAGCATGTTTCAGCTAGAAACTGTGTCATCCTGGCTTATACATCATTGCTGTGACCTAATAAACATGCAATGCAACATGCATCAACACCATTACCTATCAGCCCATGTCAATTGTGACAATCCAGGACCATTGGCTCTTAACAACTGAATAACCCTTAAAACCTTCACAGTGACCACATATAGACCAAAAACATCAATCAAATGGTTTAGAGATGCTTTTAGGTTGCAGGTCACCAGCTCTGCAGCTCCCAAACAATTTTATTCATTAGTCTTGTGTTTCGAAATTGAAATTTTGTCTTTTGCTTGCAGGTATGCTGATTTGTCCTCTGGAGGGGCAACAGAAGGCTCCATAAAATGACCCAATCAGTGCACATATCCTCCAAACTGCCAAATCTGAGTGCCCCTTTTCGTTGCTCTAATGAGGAAGAAACAGATCAAGGTGGCTCCTATTCTGTACAGACACCCTACGGATTCCAACTGGACCTTGATTTTCTCAAGTATGTTGAAGAAATCGAGAGTGGACACAGCATTCGTAGAGCTAATGTGAACCCTCGGAGGGGATCTCGGGGTGACCGTGGGCGAAATTTGGGTATTGGGGGTCGGACCAGTGGCTGGACCTCCACTGAGTCCCTTTCCTCAACAACCAGTGAGAATGGCCAGACTAACCAACCTTATCTCCAGAGCCCAATTACACCACCTAGTAAATCACAACCACTTTCTCCATTACCAGTTATCACTCCCAGTCAACCTACTTGGTCCAAAGTGCCACCACCACCTCCACCACGCAACCCTAGGGTAGAGAGAACACTTCTTGAAACTAGCCTTCGGCTGCAACAGGAGCAGAGTCAGTTTTCAAATGGTTTAGGCTCTAATTTGTCCGACCTTTCCAAAGTGAGTTCCAAAGCCAGTGGATCTAATAGGGACTTCTCTGTAGCTTCTTCCCAGCTTGCTTCAGATGCTCACTTGCTACAGATATCACCTGTTGTGCAGAACCCCCTTTCTGGGATCTGGACCAGAGCAAGTCCTCAGACATCTGGAAGGAGCACCCCAGCCTCCAACTCAGGAACATTGCCTCCTGGGCAGCTTCAGACAGTGCGAGAACAGATGGCCACTGCCCTTAGGCAGCTGAGAGAGATGGAAGAGAAAGTGAAAGGAGTACCAGCTCTAGAAAGAGAAGTTGCCATGCTCCGTGCAGAAAAGGAAAGGTTGGCTCTGGAACTTCGAAAGAAAACAGAAGAACTTGATACAACGCTCAAAATGCAGGTCTCCACTGAGGCAGTAGTGGGAGCCTTTCAACCAGGACCCCTACCGTCGCCATCAATTTGGAATAAAAGGCCAGAATGCAAAATTGATGAACAAGACAAAAAGGAAATAAGGAAACTAACCACTACTCCTGTAGAAAAAAGATCCATATCAGTAGGTAGTGACATTCCTCTTGAGGCTGTGCTAGTCTTCAATCGTCAAGCACTCAAGGATGCTGCTGTCGAAACTACTATTGATGTTTGTCATGCAGCTATTGAGACTGAGGCTAGTGTCATGCATGATGAGGGAATTCAGACTGGAGTGGATACAGAAGATGTGGCAGTCTGGGTAATAGAATCATTTCTAGGGTTAAAAAGTGAGACAGAACGAGAAATTGATACCCTGCAACACACTATCAAATTTCAACAGGAGTCAATCCAGGTTCTTGAGACACAATTAACTCAGGTCAACCAAGATCTTGAAGCTTTAAGGGCTCAGGAAATTGAGAGGACATCCAAGATTATGTTGGACAAAGAGACAATAGTGAAACCAGAGACAGTCAATGCCCAAATGGAAACATGTCCTGCTGAAGTTTGTTCAGTTGGAGTGTTGTTTCCAGATGTGACTGACCCAGAGTACATTTCAAAAACTGACCAAAGCATTCAAACAGATCCTGTGGAAACTTCAAAGGAAAAAACTGTGGCGCTAGTAAGCATTGGTATCCAGTGGGAATCTCCCTACATCACAGATATACAAGACAGTGAAGAACAGACAACTTCTGCAGAGACTGCAGGCCCTCTGAAATCTATCATGAAGAGGAAGGATGGGAGTGGCGCCGGTGCAGTTTCCAGTGGTGGCAAAAAGAGCTTGAAGTTTGTTGGAATTCTAAATGGAGGGTATGAGTCTACCTCTAGTGAAGAGGATGAAGAAGAGGATGAAGAGAGTTCCTCTGATGGAAGTGAGGCTGGTGCATGTTCAGACAGCAGCGTGGAAGAAGAGGCAGCTCTAGAGGATACATCTGAAGAAGAGATGAATATAAATGTGGATGAAACTGATAGTGATGAAAACATGCCAGCTGGGACTGAAGATTTAAAGGATCAGGCAGAGGAAGTAAAGGAAAAGTTTGAACTAAGTGCCAAAATGCGTGAAGCTTGTCTAATTTTGAAGAACCACCTTAATGATGGAGCCAAATCAGTAAAGAGTAAAGAAGTGTTGTCCAGCACTCATACCGTTCAGTTGGAGTGGTTCCGAGTATCCAGTGCAAAGATGGCCCAGCCATTACGTGTGTCAAATTACCTGATGGCTTTCTCAGAGGTCTCCCCCATCCTGCTGGAACACGTAGTCAACATGACTGACGGCAACGGCAACACTGCTTTACACTACAGTGTCTCCCATTCCAACTTCACTGTTGTGGACCTGCTGCTTGACACAGGCATGTGCAATGTTGATCAGCAGAATAAAGCCGGATATACAGCTGTGATGCTGGCAGCCCTTTCAGCAGTGAAGGAAGAGGACGACATGGCAGTGGTCCAGAAACTCTTCCGTCTGGGCAACGTCAATGCCAAGGCGAGCCAAGCAGGACAGACGGCTTTGATGCTGGCCGTGAGTCATGGACGGCATGAGATGGTGCGCGCACTGCTTGAATGTGGTGCTAATGTGAACATCCAAGATGACGAGGGGTCCACTGCTCTGATGTGTGCGAGTGAACACGGTCGAGCTGAGATTGTCTCCTTGCTGCTGGAGCAGCCGGGGTGTGACATTTCGGTCGTGGACAATGATGGAAGTAATGCTCTCTCCATTGCCCTGGAGGCATCCCACAATGACATTGCAGTTCTACTTTATGCCCACATGAACTACTCAAAAACACAAGCGGAA

Function

symbol description
kank3 Predicted to be involved in negative regulation of actin filament polymerization. Predicted to be active in cytoplasm and cytoskeleton. Is expressed in several structures, including dorsal fin fold; fin bud; gut; neural tube; and vasculature. Orthologous to human KANK3 (KN motif and ankyrin repeat domains 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_06638872_06648965.mRNA True 3370 mRNA 0.45 9 6638872 6649572

Neighbor

gene id symbol gene type direction distance location
CI01000050_06401583_06407303 PEX10 coding downstream 231549 6401391 ~ 6407323 (-)
CI01000050_06359307_06399573 NA coding downstream 239275 6359232 ~ 6399597 (-)
CI01000050_06320386_06342648 CLCN6 coding downstream 296224 6319698 ~ 6342648 (-)
CI01000050_05851079_05852014 NA coding downstream 786808 5850987 ~ 5852064 (-)
CI01000050_05800641_05808346 TPRG1L coding downstream 830526 5800004 ~ 5808346 (-)
CI01000050_06666826_06671632 NA coding upstream 17142 6666714 ~ 6671891 (-)
CI01000050_06706062_06724379 NA coding upstream 56485 6706057 ~ 6724399 (-)
CI01000050_06729717_06733879 NA coding upstream 78424 6727996 ~ 6734420 (-)
CI01000050_06735445_06742619 ESPN coding upstream 85817 6735389 ~ 6743262 (-)
CI01000050_06752838_06802179 ESPN coding upstream 103209 6752781 ~ 6802483 (-)
G216231 NA non-coding downstream 6745 6542461 ~ 6632127 (-)
G216458 NA non-coding downstream 144417 6493324 ~ 6494455 (-)
G216455 NA non-coding downstream 150435 6488025 ~ 6488437 (-)
G216454 NA non-coding downstream 150869 6487774 ~ 6488003 (-)
G216450 NA non-coding downstream 155169 6483491 ~ 6483703 (-)
G216501 NA non-coding upstream 11603 6661175 ~ 6665650 (-)
G216217 NA non-coding upstream 48352 6697924 ~ 6705911 (-)
G216510 NA non-coding upstream 66667 6716239 ~ 6716456 (-)
G216629 NA non-coding upstream 203885 6853457 ~ 6854580 (-)
G216624 NA non-coding upstream 270885 6920457 ~ 6921010 (-)
G216408 NA other downstream 282361 6356017 ~ 6356511 (-)
G216093 NA other downstream 1086769 5489557 ~ 5552103 (-)
G215935 NA other downstream 1565763 5048916 ~ 5073109 (-)
CI01000050_04564233_04580815 KANSL3 other downstream 2025980 4563687 ~ 4581278 (-)
G214436 NA other downstream 3049815 3525816 ~ 3589057 (-)
G216931 NA other upstream 514523 7164095 ~ 7165401 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location