CI01000050_06320386_06342648 (CLCN6)


Basic Information

Item Value
gene id CI01000050_06320386_06342648
gene name CLCN6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 6319698 ~ 6342648 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_06320386_06342648.mRNA
ATGGCGTGCTGTGGAGGATGTTTGTGTTGTCAGTGCTGCTGCAATGAAGGCGAAACAAGAACACCAGAGGAGCTGACAATACTGGGTGAAACCAGAGAAGACGATGATGAAATATTGCCAAGAAAAGACTATGAGAGTTTGGATTATGACCGATGTATTAATGAGCCATTCTTGGAGGTTTTAGAGGGGTTGGATAATAAGAAAGCCAAAAAGTATGAAGCGATAAAGTGGATTTTGGTCTTTGCGATTGGAGTATCAACAGGACTGACTGGCCTGTTTGTGGATTTCTTTGTGTGGCTCTTCACTCAGCTGAAGTTCAGCTTGGTTGGACAATCTGTGGAGGAATGCAGTGAGAATGGCTGTTTAGCTCTCTCATTACTGGAGCTGCTGGCTCTCAATATGATGTTCATATTCATCTCCAGTGTTCTGGTGCTCATTGAGCCTGTTGCAGCTGGGTCTGGTATCCCAGAAATTAAAAGTTACCTTAACGGAGTAAAGATTCCAGGAATTGTGCGGCTGCGGACCTTCATTTGTAAGGTCACTGGGGTCCTGTTTGCTGTTGCTGGAGGATTGTTTGTGGGTAAAGAGGGACCAATGATCCACAGTGGAGCGATAGTAGGGGCAGGACTTCCTCAGTTTCAGAGCATCACCTTCAAGAAGATCCGCTTTCACTTCCCCTATTTCCGCAGTGACAGGGACAAAAGGGATTTTGTCTCAGCGGGTGCAGCAGCCGGAGTTGCAGCTGCCTTCGGGGCACCCATAGGGGGCACACTCTTTAGTCTGGAGGAGGGATCATCCTTCTGGAACCAGGCTCTCACATGGAAAGTGTTGTTCTGCTCCATGTCTGCCACTTTCACACTCAACTTCTTTCGTTCTGGGATCAACTTCAATAAATGGGGATCATTCCAGCTCCCTGGCCTGCTCAACTTTGGAGAGTTCAAGTGCACAGATGGAGATAAGTCATGTCATTTGTGGACAGCAGTAGATTTGGCGTTTTTTGTATTAATGGGGGTGGCAGGAGGTCTGCTCGGCGCGCTGTTCAACTGCATCAACAAACGGCTCGCAAAATACCGCATGAGAAACGTTCATCCCAAAGCAAGATTCATCAGGGTGTTGGAGAGTCTGTTGGTATGTATGGTGACTTCATTAGTGATCTTCATGGCTTCAGTGACTCTGGGGGAGTGCCGAGATTTAGTCTCCACCATAAATAACAACTCATCAACACAGGGGTCTGTAAATGAGGAGGTGAACTCAACCATACGACGATTCTTCTGCTACAACAACACATATAATGACATGGCGACTCTGTTCTTCAACCCTCAAGAGGTGGCAATCCACCAGCTCTTCCACCAGAATGCTACCTTTAGTCCGGTCACCCTCTCGCTGTTCTTCATGCTGTATTTTTTTCTGAGCTGTTGGACATATGGTGTGTCCGTCCCCAGTGGTCTGTTTGTCCCGTCTCTTCTCTGTGGAGCTTCACTTGGACGCCTGGTGGCCAATGTCCTCAAAATTAACTTCCACATGCAAATCTATTCTGGGACCTTTGCCTTGATTGGAGCAGCTGCCTTCCTAGGAGGTGTGGTTAGAATGACCATCAGCCTGACAGTCATCTTAATTGAATCGACCAATGAGATCACCTACGGACTTCCTATTATGATAACACTGATGGTGGCCAAATGGACAGGAGATTTCTTTAATAAGGGAATATACGATATTCACATTCACCTGAAAGGAGTTCCGCTGCTGGAGTGGGAAACAGAAGTCGAGATGGACAAATTGACAGCCAGTGACATCATGGAGCCCAACCTGACATACGTGTATCCTCACACCCGTATTCAGTCTCTGGTCAGCATCCTGAGGACCACAGTCTATCACGCCTTCCCCGTTGTCACCGAGAACAGAGATAATGAGAAGGAGTTTATGAAAGGAAATATCCTCATAAGCAACAATATCAAATTCAAGAAAACCAGCGTGTTGACACGTGCGGGGGAGCAGAGACGGAGGTGTCAGTCAATGAAATCATACCCGTCAAGTGAGCTACGCAATGTGTGTGATGAGCAGGTTGTTGTGGAGCCGGCGGAGGAAGGGCAGGACATCCTTCAGCAGATGCTGGAGAGGAGGTATGTGCCGTACCCAAACCTTTACCCGGACCAGTCGCCCAGTGAGGAGTGGACCATGGAGGAGAGGTTCCGCCCGCTCACCTTTCACGGGCTCATCCTGCGTTCACAGCTCGTCAACTTGCTGATCCGCGGTGTCTGCTATGCTGAAAACCAGTCGAGTGCCTCACAGCCACGGCTCTCTCATTCAGAGATGACTGAGGACTACCCACGATTCCCTGACATCCACGATCTCGACCTGGCCCTTCTCAACCCACGCATGATTGTGGATGTGACTCCTTACATGAACCCCAGTCCGTATACAGTCTCTCCAAACACACGCGTCTCCCAAGTATTCAATCTGTTCAGGACCATGGGGCTTCGACACTTACCTGTAGTCAATGCAGTGGGAGAGATTGTGGGAATAATCACCAGACATAATCTTACCCATGAGTTTTTAGTTGCTAAACTTCGACAGCATTACATCACAATCTAAGACTCCACTGGCGCCGTCTGCGATCAATCAGCCAAACTTGAGTAGTGGCTCGCTTGAGAGGAGATGAGCCAAACGCTCCAGGGACCTGAGACCAGATCGCCTCCGGACCTGAACCCCTGCTTCAGGTCGCACCCTTAAGCCATTCCTAGTTCCTGCGTGGACCACTAGAGTTCGGTATCTGACCCGTCCAGGCACAAACACACACAAACACCCATCATGCTAGCACTAATGCAGGTGAAGTACAGTTAATCAACACATTTCAGGAAAGCATCCTGATTTCCTTGTACTGACGATGTTTGCTGCCTGTGTTTTACCAACCTCACTGTAGCACTTTTAATTTTGTCTCTTTGAGTTCTGAATGTTTTAAATTGTGCTTACCATTTCTGTATATTTATGAATGTTTGCTTTTGCACAAAGAGTGAGATAAACCACTGACCACAGTCCCTGGTCAAAATCTTTTTACTTAAAGGGTAAATATCATGAAACCAAGAACACGTCTGTGTCATTATTCACCCCAGAATCAAAAGAAAGATTTGTTTGTTTGTAAAGAAAATGGATTTTTTTTTTTTTTTTTTTTTTTTAGTATTGTGGCATTGGTAATGAAGGCTCCAAATGAAAAATTCTTATTACTGTACTGCCAGAGTAATATTTAAATTCTATTGCCGTCATTTATTCTGATTTCAATAAA

Function

symbol description
clcn6 Predicted to enable chloride transmembrane transporter activity. Predicted to act upstream of or within chloride transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in coronary artery disease. Orthologous to human CLCN6 (chloride voltage-gated channel 6).

GO:

id name namespace
GO:0031404 chloride ion binding molecular_function

KEGG:

id description
K05015 CLCN6; chloride channel 6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_06320386_06342648.mRNA True 3280 mRNA 0.47 23 6319698 6342648

Neighbor

gene id symbol gene type direction distance location
CI01000050_05851079_05852014 NA coding downstream 467634 5850987 ~ 5852064 (-)
CI01000050_05800641_05808346 TPRG1L coding downstream 511352 5800004 ~ 5808346 (-)
CI01000050_05766242_05770223 NA coding downstream 549475 5765796 ~ 5770223 (-)
CI01000050_05728696_05760342 TP73 coding downstream 558894 5728465 ~ 5760804 (-)
CI01000050_05717074_05720876 RER1 coding downstream 598571 5716554 ~ 5721127 (-)
CI01000050_06359307_06399573 NA coding upstream 16584 6359232 ~ 6399597 (-)
CI01000050_06401583_06407303 PEX10 coding upstream 58743 6401391 ~ 6407323 (-)
CI01000050_06638872_06648965 KANK3 coding upstream 296224 6638872 ~ 6649572 (-)
CI01000050_06666826_06671632 NA coding upstream 324066 6666714 ~ 6671891 (-)
CI01000050_06706062_06724379 NA coding upstream 363409 6706057 ~ 6724399 (-)
G216404 NA non-coding downstream 10973 6307534 ~ 6308725 (-)
G216379 NA non-coding downstream 55569 6263908 ~ 6264129 (-)
G216254 NA non-coding downstream 312614 6003702 ~ 6007084 (-)
G216213 NA non-coding downstream 369857 5949542 ~ 5949841 (-)
G216212 NA non-coding downstream 373192 5946243 ~ 5946506 (-)
G216230 NA non-coding upstream 15857 6358505 ~ 6358840 (-)
G216432 NA non-coding upstream 91395 6434043 ~ 6436808 (-)
G216445 NA non-coding upstream 130441 6473089 ~ 6473301 (-)
G216449 NA non-coding upstream 139357 6482005 ~ 6482413 (-)
G216450 NA non-coding upstream 140843 6483491 ~ 6483703 (-)
G216093 NA other downstream 767595 5489557 ~ 5552103 (-)
G215935 NA other downstream 1246589 5048916 ~ 5073109 (-)
CI01000050_04564233_04580815 KANSL3 other downstream 1706806 4563687 ~ 4581278 (-)
G214436 NA other downstream 2730641 3525816 ~ 3589057 (-)
CI01000050_03491159_03514757 NA other downstream 2808907 3491088 ~ 3514757 (-)
G216408 NA other upstream 13369 6356017 ~ 6356511 (-)
G216931 NA other upstream 821447 7164095 ~ 7165401 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002210 clcn6 coding CM030136.1 CM030136.1 7165097 ~ 7177984 (-)