XLOC_036765 (si:ch73-132k15.2)


Basic Information

Item Value
gene id XLOC_036765
gene name si:ch73-132k15.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 50134007 ~ 50135544 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071786
GTTTTTGCTGATATTCCAAATATGGAGTCTTTGACTTTGGTTCTCATAATTTCCACCTTTGTCTTTCTAAGTAATTCCTGTTTTTTCGAACCTCTACAACCAGGAGCTACTAACTGTACAGATAGCGCAGATAATTCCACTCATCAATTTGAAACCAGTTGGAAAAGCGACAAATGCATCGAATGTTATTGCTCTGACGCTGGGATGGCATGCTGTGAAACGATGGCTACAGTGATAAACCAAACTGAAGGCTGCATTGTGGATTATGATTACAGCTCATGCACATTTAATGTGTACAAGCCGAATGAACCCAGCTTCGACTGTGCCTATAGTGTTGTTGCAAAATGAACGACTGAGAACATGTTCTTTCTGTACTTGATTTTGCAAGATTAAAGTCATTACGCATTGTTTA
>TCONS_00071787
TTGTTTTTGCTGATATTCCAAATATGGAGTCTTTGACTTTGGTTCTCATAATTTCCACCTTTGTCTTTCTAAGTAATTCCTGTTTTTTCGAACCTCTACAACCAGGAGCTACTAACTGTACAGATAGCGCAGATAATTCCACTCATCAATTTGAAACCAGTTGGAAAAGCGACAAATGCATCGAATGTTATTGCTCTGACGCTGGGATGGCATGCTGTGAAACTGATAAACCAAACTGAAGGCTGCATTGTGGATTATGATTACAGCTCATGCACATTTAATGTGTACAAGCCGAATGAACCCAGCTTCGACTGTGCCTATAGTGTTGTTGCAAAATGAACGACTGAGAACATGTTCTTTCTGTACTTGATTTTGCAAGATTAAAGTCATTACGCATTGTTTA
>TCONS_00071790
ACTTGTTTTTGCTGATATTCCAAATATGTAATTCCTGTTTTTTCGAACCTCTACAACCAGGAGCTACTAACTGTACAGATAGCGCAGATAATTCCACTCATCAATTTGAAACCAGTTGGAAAAGCGACAAATGCATCGAATGTTATTGCTCTGACGCTGGGATGGCATGCTGTGAAACGATGGCTACAGTGATAAACCAAACTGAAGGCTGCATTGTGGATTATGATTACAGCTCATGCACATTTAATGTGTACAAGCCGAATGAACCCAGCTTCGACTGTGCCTATAGTGTTGTTGCAAAATGAACGACTGAGAACATGTTCTTTCTGTACTTGATTTTGCAAGATTAAAGTCATTACGCATTGTTTA
>TCONS_00071789
ACACTTGTTTTTGCTGATATTCCAAATATGGAGTCTTTGACTTTGGTTCTCATAATTTCCACCTTTGTCTTTCTAAGTAATTCCTGTTTTTTCGAACCTCTACAACCAGACTTTATTTAAATAGGAGCTACTAACTGTACAGATAGCGCAGATAATTCCACTCATCAATTTGAAACCAGTTGGAAAAGCGACAAATGCATCGAATGTTATTGCTCTGACGCTGGGATGGCATGCTGTGAAACGATGGCTACAGTGATAAACCAAACTGAAGGCTGCATTGTGGATTATGATTACAGCTCATGCACATTTAATGTGTACAAGCCGAATGAACCCAGCTTCGACTGTGCCTATAGTGTTGTTGCAAAATGAACGACTGAGAACATGTTCTTTCTGTACTTGATTTTGCAAGATTAAAGTCATTACGCATTGTTTA
>TCONS_00071788
GGTTTAAATGCTGTCAAACTGCGACATGTCACACTTGTTTTTGCTGATATTCCAAATATGGAGTCTTTGACTTTGGTTCTCATAATTTCCACCTTTGTCTTTCTAAGTAATTCCTGTTTTTTCGAACCTCTACAACCAGATAGCGCAGATAATTCCACTCATCAATTTGAAACCAGTTGGAAAAGCGACAAATGCATCGAATGTTATTGCTCTGACGCTGGGATGGCATGCTGTGAAACGATGGCTACAGTGATAAACCAAACTGAAGGCTGCATTGTGGATTATGATTACAGCTCATGCACATTTAATGTGTACAAGCCGAATGAACCCAGCTTCGACTGTGCCTATAGTGTTGTTGCAAAATGAACGACTGAGAACATGTTCTTTCTGTACTTGATTTTGCAAGATTAAAGTCATTACGCATTGTTTA
>TCONS_00072539
GTGAGTTAGCATCGCTGGTTTAAATGCTGTCAAACTGCGACATGTCACACTTGTTTTTGCTGATATTCCAAATATGGTGAGTTTAATATTTTGAGTGATCAatgtagacttaaaaaaaacatcatatagCCTACTGTTATTCGTTCtttatggtttgtttgtttgtgatgtTGTTTTCACTTGTTGTTACAGGAGTCTTTGACTTTGGTTCTCATAATTTCCACCTTTGTCTTTCTAAGTAATTCCTGTTTTTTCGAACCTCTACAACCAGGTAAataacttacacacacacacacacacacacgatcacagtcaaacttttatttatttttattttaattttttttaagccaAACAAATTCTTCGTTAAATTGATTCAGTACTGCATTGGTCaacattttgctttgtttttatgcatgTTCACTCAGACTTTATTTAAATAGGAGCTACTAACTGTACAGATAGCGCAGATAATTCCACTCATCAATTTGAAACCAGTTGGAAAAGCGACAAATGCATCGAATGTTATTGCTCTGACGCTGGGATGGCATGCTGTGAAACGTAagaaattttaacatttttgttctGAAATTTGGAGCAGTCTTATGAAATGCGTTTTTCCTTGGTGAACAGTGTGCTTAACATAAAATGTGCAAACAAGTTTTAAAAGGATTTTTCACTTAaagtcattttacttttttagtgTTACAAAGTTTTGAGTTTCTGTTCAGTTGAACACCTATTGTTTTTAAGAAAGTTGGAAACCGGTAGCCATTAATGCTCTTAGTGGGaggaaaatactatggaagtcagtgggtatgatccaaccctaatcaaacacaccggagtcagctaatcaagcttactagatgtactagaaacttcctggcaggtgtgttgaagctaaactcagcaggacagagtttggacacccctgctttaaaaccatctaaatcaggggtctcgAACTCTTAATTCcttgagggccacagctctgcagattaAGCTCTAAGGACCTCCAACACACCTGCTTAATATCCTCTTGTAGTCTTGAACAtcttggatcagctgtgtttgtttgttttgcagagctgcggccttccaTGAATCAAGTCTGAAACCAATGCTCTAAATGATTTTGAACTGACAAAGATGCTTAATCCTACTTAAGAGGATCAGAAGTTGTTTGACATCAATTTAAGCCTATTTATTATCAATTTAGTGTCTAAAATCATTGTTTATGGTTGTGTTTTATTTCTACATTGGATAACAGTGgactgcttttttatttatagacTTGTAGTTATGTCAAGTGTTTGTCACCTAAAGTAATGTTGTTTTTTGCAGGATGGCTACAGTGATAAACCAAACTGAAGGCTGCATTGTGGATTATGATTACAGCTCATGCACATTTAATGTGTACAAGCCGAATGAACCCAGCTTCGACTGTGCCTATAGTGTTGTTGCAAAATGAACGACTGAGAACATGTTCTTTCTGTACTTGATTTTGCAAGATTAAAGTCATTACGCATTGTTTA

Function

symbol description
si:ch73-132k15.2 Predicted to be located in extracellular region.

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-191 Predicted to be located in extracellular region.

Ensembl:

ensembl_id ENSDARG00000095867

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071786 False 412 mRNA 0.39 4 50134007 50135492
TCONS_00071787 False 403 lncRNA 0.38 4 50134007 50135494
TCONS_00071790 False 369 lncRNA 0.39 4 50134007 50135496
TCONS_00071789 False 433 lncRNA 0.38 4 50134007 50135498
TCONS_00071788 False 430 lncRNA 0.39 4 50134007 50135528
TCONS_00072539 True 1538 lncRNA 0.36 1 50134007 50135544

Neighbor

gene id symbol gene type direction distance location
XLOC_036764 antxr1a coding downstream 943 50066802 ~ 50133064 (-)
XLOC_036763 agtpbp1 coding downstream 198494 49885638 ~ 49935513 (-)
XLOC_036762 NA coding downstream 262425 49864078 ~ 49871582 (-)
XLOC_036761 NA coding downstream 308090 49803988 ~ 49825917 (-)
XLOC_036760 hnrnpk coding downstream 367766 49744801 ~ 49766241 (-)
XLOC_036766 NA coding upstream 1931 50137475 ~ 50139983 (-)
XLOC_036767 hp coding upstream 7650 50143194 ~ 50147948 (-)
XLOC_036768 nkx3-1 coding upstream 121386 50256930 ~ 50259448 (-)
XLOC_036769 nkx2.7 coding upstream 149315 50284859 ~ 50287949 (-)
XLOC_036770 stc1 coding upstream 187225 50322769 ~ 50346246 (-)
XLOC_036746 CT737131.1 non-coding downstream 981532 49149904 ~ 49152475 (-)
XLOC_036745 NA non-coding downstream 1068968 49043744 ~ 49065039 (-)
XLOC_036743 NA non-coding downstream 1335975 48795458 ~ 48798032 (-)
XLOC_036772 NA non-coding upstream 373217 50508761 ~ 50511887 (-)
XLOC_036773 CABZ01060030.1 non-coding upstream 382238 50517782 ~ 50517903 (-)
XLOC_036776 FO704819.1 non-coding upstream 754045 50889589 ~ 50898357 (-)
XLOC_036777 NA non-coding upstream 818114 50953658 ~ 50954244 (-)

Expression


Co-expression Network