XLOC_036764 (antxr1a)


Basic Information

Item Value
gene id XLOC_036764
gene name antxr1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 50066802 ~ 50133064 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071784
ATGGCAAAACAACTTTGGAGGATAGCAGTTTTGCTCTGCGTCAAATTGGCGGACACTGCAAGTGGAAATACAGGACTCACGCCGGAAAAAGGGACAGCGGCGTCCTCTTGCTACGGGGGCTTTGACCTTTACTTTGTACTCGACAAATCAGGAAGTGTGCAGCATCACTGGAACGAAATATATAACTTTGTGGAACATCTGGCCCAAAAATTCATAAGCCCGCAGTTGCGAATGTCCTTCATTGTATTCTCCGATCAGGGCAAGATTCTGATGCAGCTCACAGAAGACAGAGAGCAAATTCGTAAGGGTCTGAAGGAGCTCCAGGACGTGCGGCCAGGTGGAGACACTTTTATGCATGAAGGCATTCAGAGGGCAAGTGAACAGATTTACTATGGGAACACAGAAGGATACCGGACAGCCAGCGTCATCATCGCCCTCACTGATGGAGAACTGCAcgaaaatcacttttattatgcTGAAAGAGAGGCCAATCGCTCTCGCAGCCTCGGCGCCTCTGTGTACTGTGTAGGAGTCAAGGACTTCAATGAGACTcagCTGGCCAAGATTGCTGACAGCAAGGATCATGTCTTTCCAGTAAATGACGGCTTTGAAGCTTTACAAGGTGTCATTGATTCGATCTTGAAGAAATCATGCATAGAGATCCTCGCAGCAGAACCATCCAGTATCTGTGCTGGAGAGGCATTCCAGGTCGTTGTGAGAGGAAATGGATTTCTTCATGCTAGAAATGTGGACAAGGTCCTTTGCAGTTTCAGAATTAATGAAACCCATACCAGAATGGTGAAGCCGCTGGTAGTGGAGGACACATACCTGCTATGTCCAGCTCCTGTTCTTCGAGAGGAGGGAACGGCAGCTTCCCTTTATGTTAGCATGAACGAAGGCCTGAGTTTTATCTCAAGTTCTGTTACAATCACCACGGTAAAATGTTCTGATGGTACAATTCTTGCCATAGCACTGCTGATAGTGATGCTGCTGCTGATTCTGGCTCTGCTGTGGTGGTTCTGGCCGCTGTGCTGCACCGTGGATGACGAAGAGGATGGAAGTCCTAAGAAGAAGTGGCCCACGGTGGACGCGTCCTACTATGGAGGAAGAGGAGTTGGTGGCATTAAAAGGATGGAGGTTCGTTGGGGTGAGAGGGGTTCAACCGAGGAGGGCGCTAAACTGGAAAAGGCGAAGAACGCGAGGGTGAAAATGCCAGAGCAAGAGTTTGAAGTTCCTCCTGCTCGCATCTTAAATAATGGCATGAGGAAACCGCCAGGCCCTCGAAAATGGTACTCGCCCATAAAGGGAAAACTAGATGCATTGTGGGTACTTCTGAAGAAAGGATACGATCGGGTGTCCATCATGCGACCACAACCAGGAGACAAGGTAAAACTGTTTATTGTTTTAACAGATTCGTTACATTTACAGGTTTTATCAGACTTAAAGCAGCGCTGCATTTTGGTACGAACTGATTAA
>TCONS_00071785
GCGGCAGTGAGCAGAAGTGTGTCAGACTTCTGGATGCATGTGCACATTTACATGTAGAATCTAGAAACTTCTAATAACCCAAAACTTTAAGTATGCCTTTTCCGCACAAGTTCTCCACAAGACGGATTATGGATTAAGAAGCATCCTGTGGAAtcctatttaattttttctgaTGGTCACTTTTTCTTATAgtagattttaattatttaatttttgcttgAGTCAATCAGCTCTTCACAACATGTGCAGACTTTGGAGGATAGCAGTTTTGCTCTGCGTCAAATTGGCGGACACTGCAAGTGGAAATACAGGACTCACGCCGGAAAAAGGGACAGCGGCGTCCTCTTGCTACGGGGGCTTTGACCTTTACTTTGTACTCGACAAATCAGGAAGTGTGCAGCATCACTGGAACGAAATATATAACTTTGTGGAACATCTGGCCCAAAAATTCATAAGCCCGCAGTTGCGAATGTCCTTCATTGTATTCTCCGATCAGGGCAAGATTCTGATGCAGCTCACAGAAGACAGAGAGCAAATTCGTAAGGGTCTGAAGGAGCTCCAGGACGTGCGGCCAGGTGGAGACACTTTTATGCATGAAGGCATTCAGAGGGCAAGTGAACAGATTTACTATGGGAACACAGAAGGATACCGGACAGCCAGCGTCATCATCGCCCTCACTGATGGAGAACTGCAcgaaaatcacttttattatgcTGAAAGAGAGGCCAATCGCTCTCGCAGCCTCGGCGCCTCTGTGTACTGTGTAGGAGTCAAGGACTTCAATGAGACTcagCTGGCCAAGATTGCTGACAGCAAGGATCATGTCTTTCCAGTAAATGACGGCTTTGAAGCTTTACAAGGTGTCATTGATTCGATCTTGAAGAAATCATGCATAGAGATCCTCGCAGCAGAACCATCCAGTATCTGTGCTGGAGAGGCATTCCAGGTCGTTGTGAGAGGAAATGGATTTCTTCATGCTAGAAATGTGGACAAGGTCCTTTGCAGTTTCAGAATTAATGAAACCCATACCAGAATGGTGAAGCCGCTGGTAGTGGAGGACACATACCTGCTATGTCCAGCTCCTGTTCTTCGAGAGGAGGGAACGGCAGCTTCCCTTTATGTTAGCATGAACGAAGGCCTGAGTTTTATCTCAAGTTCTGTTACAATCACCACGGTAAAATGTTCTGATGGTACAATTCTTGCCATAGCACTGCTGATAGTGATGCTGCTGCTGATTCTGGCTCTGCTGTGGTGGTTCTGGCCGCTGTGCTGCACCGTGATCATCCATGAGCCTCCACCACCCCCAGTGGAAGACAGT

Function

symbol description
antxr1a Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in toxin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane. Human ortholog(s) of this gene implicated in GAPO syndrome and colorectal carcinoma. Orthologous to human ANTXR1 (ANTXR cell adhesion molecule 1).

GO:

id name namespace
GO:1901998 toxin transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-15 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in toxin transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and plasma membrane. Human ortholog(s) of this gene implicated in GAPO syndrome and colorectal carcinoma. Orthologous to human ANTXR1 (ANTXR cell adhesion molecule 1).

Ensembl:

ensembl_id ENSDARG00000025672

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071784 False 1476 mRNA 0.48 17 50066802 50133064
TCONS_00071785 True 1318 mRNA 0.46 14 50079119 50132860

Neighbor

gene id symbol gene type direction distance location
XLOC_036763 agtpbp1 coding downstream 131289 49885638 ~ 49935513 (-)
XLOC_036762 NA coding downstream 195220 49864078 ~ 49871582 (-)
XLOC_036761 NA coding downstream 240885 49803988 ~ 49825917 (-)
XLOC_036760 hnrnpk coding downstream 300561 49744801 ~ 49766241 (-)
XLOC_036759 C8H9orf64 coding downstream 323285 49730163 ~ 49743517 (-)
XLOC_036765 si:ch73-132k15.2 coding upstream 943 50134007 ~ 50135544 (-)
XLOC_036766 NA coding upstream 4411 50137475 ~ 50139983 (-)
XLOC_036767 hp coding upstream 10130 50143194 ~ 50147948 (-)
XLOC_036768 nkx3-1 coding upstream 123866 50256930 ~ 50259448 (-)
XLOC_036769 nkx2.7 coding upstream 151795 50284859 ~ 50287949 (-)
XLOC_036746 CT737131.1 non-coding downstream 914327 49149904 ~ 49152475 (-)
XLOC_036745 NA non-coding downstream 1001763 49043744 ~ 49065039 (-)
XLOC_036743 NA non-coding downstream 1268770 48795458 ~ 48798032 (-)
XLOC_036772 NA non-coding upstream 375697 50508761 ~ 50511887 (-)
XLOC_036773 CABZ01060030.1 non-coding upstream 384718 50517782 ~ 50517903 (-)
XLOC_036776 FO704819.1 non-coding upstream 756525 50889589 ~ 50898357 (-)
XLOC_036777 NA non-coding upstream 820594 50953658 ~ 50954244 (-)

Expression


Co-expression Network