XLOC_036783 (si:ch211-198o12.4)


Basic Information

Item Value
gene id XLOC_036783
gene name si:ch211-198o12.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 51341612 ~ 51349431 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071811
tagatttaaaacgCGTTTTATAAGCTGTGAAGATGAAGTCAAGAATTTCAAACCTGCCATTTCTACATAAAACCGACAGCATTTATGAATCCACAACCAAGAGCAACTTCAGACTGGCAGAAATCGCCGCCAACCGTGGCATTGAGCCCAAGCTAACCCACCTTACACTGCAGAAAACCAACATTAAAATGTACGACGACAGGTGTGCGGAATTTGTGACCACCAGTTCTGCCTTCAAGCATCTGCCGGGGGCCACAGCTCAGCTTGTTCGACCCACAACATCAGTCAAGACAAGCTGGACTGAGGGGACAATTCCTGAACCCATTTATAAGTCTTCATACACCAAACATGAAATATCGCCATTATCCCCAGTTCTTAGAGCGAAGGAGTTGACCAACACAGGTGTTGGCTCAAGTTTAAGGCAGGAGAAAAAAGACCAGTTTGACTCAACTTGTCATGAGAATTTCCAATATCCTCCTCCTCTCAAGTCCACAGAAAAGCAACGTGTTCGGCATTCATCCATACCAATGGGAGACCAAGAAAAGATACTGGACAGACAAACAATGTATTCCAGCTCATTCAGACAATCAGCTGCTCTCAGCCCTGTTAAGGTCAAGGAATACCTGCTTCCTAACATAAAGAAATATCGGCCTCTCAACCTTCGGGAACTTTGTGATGATGAGTGGATAACAACAACTGAGGAATACTGTGCACACAAATGTGGTCCTGTTCAGCTGGTGAACATAAACCGAAATCTCAGCTTTGTCTTTAAAGGAGAGAAACCTGAGGAGAAACTGTCGACAACAAACCAGCTTTTCTTCCCAGAGATAAACCGCACTCAGCTCCCTGTGTATGTGGATGGATCCAGCATCAGGAATTTGAGCTGTGTTCAATTCGGGAGGCCTGATCTGGCTGGAAACTTCTACGGCACAACATCACAGGAACAGTTTCTTGCTAAAGAAGTGATTCGTCCCAAGCCACCCATCTACCCGCCGAGTTATGTGCTGTATGAGCAAGCTTGTGTGTTTTTAGAGCCCGATCGGATGCTTACAACTGTGCAAAAAGATTTTGTCTCCCTGACTGCCAGAAGACAGAAACTGAGCCCAAGTCACCTTCACAAGGTTCAAGACAGCCATATCAAGCCTCTGCATGGCAAACAAGATTTCAAGACAACCCACAGTGAAGCTTTTGTGCTCAAACCCTACTGCAAGCCATTTCTAATCAACCCAAACCAACGACACATCAGCCATATTGCATTTTGAGCTAAAAAGCATCCAACAAAAGTATCTGTGGCCACAATTTagctacattaaataaaattttggcATCACATTGTT
>TCONS_00071812
gatttaaaacgCGTTTTATAAGCTGTGAAGATGAAGTCAAGAATTTCAAACCTGCCATTTCTACATAAAACCGACAGCATTTATGAATCCACAACCAAGAGCAACTTCAGACTGGCAGAAATCGCCGCCAACCGTGGCATTGAGCCCAAGCTAACCCACCTTACACTGCAGAAAACCAACATTAAAATGTACGACGACAGGTGTGCGGAATTTGTGACCACCAGTTCTGCCTTCAAGCATCTGCCGGGGGCCACAGCTCAGCTTGTTCGACCCACAACATCAGTCAAGACAAGCTGGACTGAGGGGACAATTCCTGAACCCATTTATAAGTCTTCATACACCAAACATGAAATATCGCCATTATCCCCAGTTCTTAGAGCGAAGGAGTTGACCAACACAGGTGTTGGCTCAAGTTTAAGGCAGGAGAAAAAAGACCAGTTTGACTCAACTTGTCATGAGAATTTCCAATATCCTCCTCCTCTCAAGTCCACAGAAAAGCAACGTGTTCGGCATTCATCCATACCAATGGGAGACCAAGAAAAGATACTGGACAGACAAACAATGTATTCCAGCTCATTCAGACAATCAGCTGCTCTCAGCCCTGTTAAGGTCAAGGAATACCTGCTTCCTAACATAAAGAAATATCGGCCTCTCAACCTTCGGGAACTTTGTGATGATGAGTGGATAACAACAACTGAGGAATACTGTGCACACAAATGTGGTCCTGTTCAGCTGGTGAACATAAACCGAAATCTCAGCTTTGTCTTTAAAGGAGAGAAACCTGAGGAGAAACTGTCGACAACAAACCAGCTTTTCTTCCCAGAGATAAACCGCACTCAGCTCCCTGTGTATGTGGATGGATCCAGCATCAGGAATTTGAGCTGTGTTCAATTCGGGAGGCCTGATCTGGCTGGAAACTTCTACGGCACAACATCACAGGAACAGTTTCTTGCTAAAGAAGTGATTCGTCCCAAGCCACCCATCTACCCGCCGAGTTATGTGCTGTATGAGCAAGAGCCCGATCGGATGCTTACAACTGTGCAAAAAGATTTTGTCTCCCTGACTGCCAGAAGACAGAAACTGAGCCCAAGTCACCTTCACAAGGTTCAAGACAGCCATATCAAGCCTCTGCATGGCAAACAAGATTTCAAGACAACCCACAGTGAAGCTTTTGTGCTCAAACCCTACTGCAAGCCATTTCTAATCAACCCAAACCAACGACACATCAGCCATATTGCATTTTGAGCTAAAAAGCATCCAACAAAAGTATCTGTGGCCACAATTTagctacattaaataaaattttggcATCACA
>TCONS_00071813
CCCATTTATAAGTCTTCATACACCAAACATGAAATATCGCCATTATCCCCAGTTCTTAGAGCGAAGGAGTTGACCAACACAGGTGTTGGCTCAAGTTTAAGGCAGGAGAAAAAAGACCAGTTTGACTCAACTTGTCATGAGAATTTCCAATATCCTCCTCCTCTCAAGTCCACAGAAAAGCAACGTGTTCGGCATTCATCCATACCAATGGGAGACCAAGAAAAGATACTGGACAGACAAACAATGTATTCCAGCTCATTCAGACAATCAGCTGCTCTCAGCCCTGTTAAGGTCAAGGAATACCTGCTTCCTAACATAAAGAAATATCGGCCTCTCAACCTTCGGGAACTTTGTGATGATGAGTGGATAACAACAACTGAGGAATACTGTGCACACAAATGTGGTCCTGTTCAGCTGGTGAACATAAACCGAAATCTCAGCTTTGTCTTTAAAGGAGAGAAACCTGAGGAGAAACTGTCGACAACAAACCAGCTTTTCTTCCCAGAGGTACTGTAGATATGACCTGATGCAGCCAATCCTCTCTAGTAGATACCAATTCCTTGc

Function

symbol description
si:ch211-198o12.4 Orthologous to human TEX45 (testis expressed 45).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-300 Orthologous to human TEX45 (testis expressed 45).

Ensembl:

ensembl_id ENSDARG00000068098

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071811 False 1337 mRNA 0.44 8 51341612 51349431
TCONS_00071812 False 1315 mRNA 0.45 8 51341617 51349429
TCONS_00071813 True 564 lncRNA 0.43 5 51345350 51349111

Neighbor

gene id symbol gene type direction distance location
XLOC_036782 kansl3 coding downstream 681 51304099 ~ 51340931 (-)
XLOC_036780 bmp1a coding downstream 48311 51165392 ~ 51293301 (-)
XLOC_036781 NA coding downstream 128944 51212413 ~ 51212668 (-)
XLOC_036779 CR855300.2 coding downstream 313659 51027839 ~ 51027953 (-)
XLOC_036778 rab7b coding downstream 360437 50968990 ~ 50981175 (-)
XLOC_036784 chmp7 coding upstream 1022 51350453 ~ 51367298 (-)
XLOC_036785 lgi3 coding upstream 25877 51375308 ~ 51404806 (-)
XLOC_036786 fgfr1a coding upstream 81166 51430597 ~ 51524453 (-)
XLOC_036787 ankrd39 coding upstream 223693 51573124 ~ 51579286 (-)
XLOC_036788 kctd9a coding upstream 237052 51586483 ~ 51599169 (-)
XLOC_036777 NA non-coding downstream 387368 50953658 ~ 50954244 (-)
XLOC_036776 FO704819.1 non-coding downstream 443255 50889589 ~ 50898357 (-)
XLOC_036773 CABZ01060030.1 non-coding downstream 823709 50517782 ~ 50517903 (-)
XLOC_036793 NA non-coding upstream 637379 51986810 ~ 51988347 (-)
XLOC_036796 NA non-coding upstream 948270 52297701 ~ 52310627 (-)
XLOC_036797 NA non-coding upstream 1052226 52401657 ~ 52405146 (-)
XLOC_036801 NA non-coding upstream 1278076 52627507 ~ 52631484 (-)
XLOC_036805 NA non-coding upstream 1528391 52877822 ~ 52882776 (-)

Expression


Co-expression Network