XLOC_036790 (tbx16)


Basic Information

Item Value
gene id XLOC_036790
gene name tbx16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 51733907 ~ 51753604 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071829
ATCTACAGCAGAGGAACTGACCTGCACTGAAGGAGCAGAAACACCAGAGCATTGGACTTAACATTGGAATTAATCCAGTTCTGATGGAGACCTTGCGTTTGAACTGAAACACTTAGATACACCAGATTTAGATTATTttctgacattttcttttagAGGACATCTTTAAAGAAGGCTAAATAATGCAGGCTATCAGAGACCTCAAGCACAATTTCAGCCTCcctcctcctccatccatgcCCGGAGCCGGTGATTCCTACCATCAAGGCAACATCCGAATGACTCTGGAGGATCCCGAGCTGTGGAGATCCTTCCATGAGATCGGCACTGAGATGATCATCACCAAACCTGGCAGAAGGATGTTTCCACACTGCAAAATCAGCTTGTCTGGACTGGTGCCGTATGCAAAGTACATCTTACTGGTGGACATGGTACCAGAAGACGGTCTGAGATATAAGTGGAATAAGGATAAGTGGGAGGTTGCAGGTAAAGCTGAGCCCCAGCCGCCCTACAGGACGTACCTGCACCCGGATTCACCAGCGCCCGGCAGCCACTGGATGAAGCAGCCCGTGTCCTTCCTCAAGCTGAAGCTCACCAATAACGCACTGGACCAGCATGGACATATTATCCTTCACTCTATGCACCGCTACCATCCACGTTTCCACATTGTTCAGGCTGATGATCTGTACAGCGTCCGCTGGAGCGTCTTCCAAACCTTTACCTTCCCCGAGACCTCCTTTACTGCCGTCACTGCCTACCAGAACACTAAAATTACAAAGCTGAAAATTGACCACAATCCCTTTGCCAAAGGATTTAGAGATGAGGGAACAAACTCTAAAAGGCGGGCAAACAGAAATCTGCCTGATCCCGAGCGAGTTGCAAAGAAAATGTCGAAAGAGTCTGAACATGGAAGCCCACGAGATGTCCAGCCGTCATCGTGTGAAGCTCTGGATGATGAGCATGCGGGCCGTAAAGAGCTGGAGGTGAAGGCTGAGCGATACTCCCCATGGGGCGGAGCTTGCGACCGGGACAGCGGACACGCTCTCCGTCCAGAGTCCCCACTGGGATCAGACCATCGAGACGTGTACAGCTCCGAGCAGCTCGTTCCAGGACAGAACACATACCAGCCGTACAGATTTCACGAATACGGCAAATCCCCGTCTCCATCTTCATCTTCCAGCGTTGGCGGCAGCAGTGCATGTGGAAGCGCGGGACGTCCCAGCTTTGAGTCCCGAGTCTTGGACGTGGCCACCGTGCCCGACACAGACAGCTCCAGCAAGCCCTCCTCCGCTCCAGAGTTCAGCCTCCCTCCGCATCCCTCTGCAGGACACCAGGAGTACGCTGGAGTGCTAAACATGGCCATCACCCAGGCCAAACCAGGCATGCTGGGAACTCATCCGCTTTACAGCCACTACAGCACAGAACAGTCTCTGGGGCAGTGGAGCGGGGCAGCAGCATCCCAATACCCGCCTCCACCTCCGCCCCATCATCACCTTCCCACCGAATACAGCAGCCAAGCTGTCCATCATGGCTATCACCATGGAAACGTTGGCGATTGGAGCCAGTATCCGCTTTTCTCATACTCGTGCTGGTGAGCCGGACACCGATTGAGAGACCATTTTGAGGatgcttatttttaattttctgcaCGATGAGGTCTGGATGGTTTCTCATGACCTGTAAAATGGCACACGAAGTCGCCCGGTACTGAGTGTACCAAAAGTGAACACAAACTGTGAGAGGACGCACTAACTACACTTGCAAGAAGTATCCTAATTTTCTGACTgagtttctagtctaaatattgaTTAACTGTTAAATTAAATtgacaagacaaaaataaaaatgttttaggaAATCATGAGTGAAAATTGAGAGTTTTTATTTATAACTAGCTAAATATTTGGATAGTGGGGTTAGTAAAATAATATAGTTACACTTATTATTTAgagtaaaaatatgcattttaatttaatcttttatCCATATTTAgatttatgttttaatgtaaaattaatctGCCagtgcagatttaaaaacaaaaaagtatttcAATCTAATAacgtatttttattattatttttacataaattattatgttattatagataaataattattaaaataatttaatttataataaataaatattatgttattataagtttaaaattcagtttttccatattttaaaatgaaacgaTATTAATTCACTAacaccactggcagattatttaagtagttttaaattaaaaactcacTATTTTCACTTGCTATTTCTGGACTTTCgtctaaaaaaaaagtgcatgtttgattaaaaaatgtatcGATATTTAGACTTAAAAACTCtcaaaaaatataaagaaaaattaaaagtaaaaaatgtgcttattttttcattattatcaaATCACAAGGGGTTTTCCTTAAAACTATCAACAAAACAACCCCACTTAATTTCGCTTTTTATTTagtgaaaaaaaaagcattttaatttaagattttatGGATACttagatttatgtttttttatgtcaaaATCTGCCAGTgcagtttaaaagaaaaaaaaaaaaaagatttcaataaaacaaagtaattaaactttacaataagtatttaaaattgtacattttgttgtgcgcgagttttaaaaactcacttaattattacttattatttgtctttattacttaattttatttgtctaaaaatgcatatttgattttaaaatgtatcgatatttaaacttaaaaactctctaaaaatataatgaaaaatgACAAGTAAaagatttgattatttttttcattattaataaatcataaataagtttttttcttcttaatctataaaaaacacttaattttcgGTTATTGTTCCTTGTAAAGTATGCATTTTAATTCAAGATTTTATCAAtacttaaatttgtttttatctcaAAATCATCTGCCAGTGCAGATTTGAAAACAgaattatttcactttattatgagtattttaaattgttagttttttatattacaatgttaaaattaataggttttaaaatagttttaagaaTGAAACCCCTAATTGTGACTtactaatactaaaaaaaaagaaagtgtttttacttttaattttttctaaACAGTTTGTCTAAATATCAAAAATGTTCGAATCAAACAtgcattttttagacaagaaaaagttttctttgaacataaaaagcaaaaaagttattttcaataattttaaggaaaaactcttaattgacattaataataaataaaaaaattttttttttggagtttttaatataaataaaacattttttaatcaaacatgCATCGTAAATAAGAAGCAAAAATTATGTGAGTTTATATTTAAAACTATCTAAATAATTGCAGAGTGGCGTTGGTGATTTAATATTGTTTTCAGTTTCAAAAGATTGAATttgaaacaattataataaagtgaaataattttgttttcagattaaaatagacttttttttaaaaaacctcAGTCAtcttatttagcttgttttatagaaaaacataattttgacttattattaatgaaaaaaaaattcttaacatTTTTTTGAGAGTCTCTAGTCGATAGTTTTTGGGAATTATAAGTAAATAttaagtgatttaaaaaatttataacaagcaaaataatctgccagtgttgtggaaaaaattacttgtttttttttctttacattttttggagagtttttagtctaaatatcgatacaattttaaatcaaacatgcatcaaaaataataagtgaaaaataaataagattttgtttAAAACGGCTAAACAATCTTGGCCAGTGATGCTAGTAAATTAATATCATCTTCAGTTAAGTatttataataaagtaaaataattctgttttcattttgttatgtttttactccaaaggcaaattattttgcttgttttaaagaaaaaccctCAATTTTgacttgttaataaaaaaattaattaaataaaacaaaaaattacctGTCATTTTTCTtctatgtatttctttttttgaaaGTATCAAGTCGATAAATTCTTAAACCAACATGAATTTTCGGAAATCGTTAGTGAGAGTTatgagtatttattttaaataagcaaaataatcctgGCCAGTGGTGTTAGTAAATTAATatcattttcagtgtaaaatttacaaaaaaaaaactaaacattttttttcaaattgaaaTACAAGTCTTTTCTTAAAACACTATCAGATTATTTTACTAGTTTTAAGGCGAAACTCACTCAATGTTtactaataatgaaaaaaaaaaaaatttgagttgTCAAAAAAATTGCCTGTTTGTTTAAGACATTTTTAGATATTCGgacacaaaaaaattaagaaaagcatTATTATTTAGCAATATATAACATTTGTGGGTCAGTTTGGATGCAAATAAAGAAAGTGCATCAGTTTAACCAAACTACAAGTCTGTCtgctaattttacattttttgtgtgttttttcgaCTGTGAAGGGAAAAAAATAGCATTGTGATGGACCATTTGGAAATGTTTCTCTGTAGACTTCTATCTTAAAgcgttagttcaccccaaaaatgaaaatttaccatATTGTTTATTTGCTTATGGGGTTTTATGGTTGAAAACggacacaaaaaaagatatttggactaaaatggaagtcaatgcacaaaagagggaaaaaaaaaccctcaaatatgttttaaacaaataaacaatgacAGGGTTTTCAATTTTAGGTGAACAGCCTCTTAAAATGGACCCACAATTGACGGGCTTTCCTGGCTTAAAAATGTCTATTTATTGTGTGTTTGCTTTTGCTGCTAcgtaatattatttttgttaaaaaataagaGAAATGTAGTGTAAAATGCTGTTTGGAAGTGGCTGAGTTATATGTCTGAAATTCTGAGTGGTCAGTAAACATCTTCAAAG

Function

symbol description
tbx16 Enables transcription cis-regulatory region binding activity. Acts upstream of or within several processes, including Kupffer's vesicle development; animal organ development; and blood vessel morphogenesis. Located in chromatin and nucleus. Is expressed in several structures, including forerunner cell group; germ ring; mesoderm; presumptive mesoderm; and spinal cord.

GO:

id name namespace
GO:0001708 cell fate specification biological_process
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0007525 somatic muscle development biological_process
GO:0048793 pronephros development biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0031016 pancreas development biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0048821 erythrocyte development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0001525 angiogenesis biological_process
GO:0048565 digestive tract development biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0061515 myeloid cell development biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0001570 vasculogenesis biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0048341 paraxial mesoderm formation biological_process
GO:0001889 liver development biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0039023 pronephric duct morphogenesis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0060809 mesodermal to mesenchymal transition involved in gastrulation biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0048389 intermediate mesoderm development biological_process
GO:0001947 heart looping biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990615-5 Enables transcription cis-regulatory region binding activity. Acts upstream of or within several processes, including Kupffer's vesicle development; animal organ development; and blood vessel morphogenesis. Located in chromatin and nucleus. Is expressed in several structures, including forerunner cell group; germ ring; mesoderm; presumptive mesoderm; and spinal cord.

Ensembl:

ensembl_id ENSDARG00000007329

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071829 True 4949 mRNA 0.33 9 51733907 51753604

Neighbor

gene id symbol gene type direction distance location
XLOC_036789 npy8br coding downstream 97977 51634803 ~ 51635930 (-)
XLOC_036788 kctd9a coding downstream 134738 51586483 ~ 51599169 (-)
XLOC_036787 ankrd39 coding downstream 154621 51573124 ~ 51579286 (-)
XLOC_036786 fgfr1a coding downstream 209454 51430597 ~ 51524453 (-)
XLOC_036785 lgi3 coding downstream 329101 51375308 ~ 51404806 (-)
XLOC_036791 si:ch73-313l22.2 coding upstream 26130 51779734 ~ 51933662 (-)
XLOC_036792 cep78 coding upstream 180379 51933983 ~ 51954598 (-)
XLOC_036793 NA coding upstream 233206 51986810 ~ 51988347 (-)
XLOC_036794 vps13a coding upstream 238740 51992344 ~ 52091696 (-)
XLOC_036795 tcf7l1b coding upstream 353214 52106818 ~ 52230115 (-)
XLOC_036781 NA non-coding downstream 521239 51212413 ~ 51212668 (-)
XLOC_036779 CR855300.2 non-coding downstream 705954 51027839 ~ 51027953 (-)
XLOC_036777 NA non-coding downstream 779663 50953658 ~ 50954244 (-)
XLOC_036776 FO704819.1 non-coding downstream 835550 50889589 ~ 50898357 (-)
XLOC_036773 CABZ01060030.1 non-coding downstream 1216004 50517782 ~ 50517903 (-)
XLOC_036796 NA non-coding upstream 544097 52297701 ~ 52310627 (-)
XLOC_036797 NA non-coding upstream 648053 52401657 ~ 52405146 (-)
XLOC_036801 NA non-coding upstream 873903 52627507 ~ 52631484 (-)
XLOC_036805 NA non-coding upstream 1124218 52877822 ~ 52882776 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_03129712_03134758 TBX16 coding CI01000050 null 3129712 ~ 3134963 (+)