Gene
RNA
| Item | Value |
|---|---|
| gene id | G212943 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000050 |
| NCBI id | null |
| chromosome length | 7556436 |
| location | 2829560 ~ 2830995 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU241516 | True | 1436 | lncRNA | 0.55 | 1 | 2829560 | 2830995 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000050_02814263_02825948 | POLR3D | coding | upstream | 3407 | 2814263 ~ 2826153 (+) |
| CI01000050_02778979_02781848 | NA | coding | upstream | 46915 | 2778979 ~ 2782645 (+) |
| CI01000050_02758917_02764495 | SLD5, GINS4 | coding | upstream | 64530 | 2758917 ~ 2765030 (+) |
| CI01000050_02745996_02750915 | NA | coding | upstream | 78328 | 2745996 ~ 2751232 (+) |
| CI01000050_02697366_02720081 | DBNL, DBNLB | coding | upstream | 108363 | 2697366 ~ 2721197 (+) |
| CI01000050_02833976_02838912 | NA | coding | downstream | 2893 | 2833888 ~ 2839484 (+) |
| CI01000050_02852118_02864754 | RNF122 | coding | downstream | 21123 | 2852118 ~ 2865822 (+) |
| CI01000050_02878198_02942065 | VPS13A | coding | downstream | 47203 | 2878198 ~ 2942735 (+) |
| CI01000050_02978801_02980782 | CEP78 | coding | downstream | 147806 | 2978801 ~ 2980782 (+) |
| CI01000050_02995539_03115563 | CABIN1 | coding | downstream | 164544 | 2995539 ~ 3116078 (+) |
| G212934 | NA | non-coding | upstream | 20643 | 2808560 ~ 2808917 (+) |
| G212933 | NA | non-coding | upstream | 25249 | 2803992 ~ 2804311 (+) |
| G212912 | NA | non-coding | upstream | 31656 | 2783623 ~ 2797904 (+) |
| G212930 | NA | non-coding | upstream | 52788 | 2776343 ~ 2776772 (+) |
| G212929 | NA | non-coding | upstream | 53340 | 2775994 ~ 2776220 (+) |
| G212948 | NA | non-coding | downstream | 37570 | 2868565 ~ 2868795 (+) |
| G212950 | NA | non-coding | downstream | 39904 | 2870899 ~ 2871163 (+) |
| G212969 | NA | non-coding | downstream | 132206 | 2963201 ~ 2966079 (+) |
| G212970 | NA | non-coding | downstream | 146214 | 2977209 ~ 2977436 (+) |
| G212973 | NA | non-coding | downstream | 163390 | 2994385 ~ 2994674 (+) |
| G212927 | NA | other | upstream | 54427 | 2774839 ~ 2775133 (+) |
| CI01000050_01691894_01697791 | SULT1ST2, SULT1ST3 | other | upstream | 1132152 | 1691374 ~ 1698973 (+) |
| CI01000050_01296683_01297763 | SELENOK | other | upstream | 1529954 | 1296365 ~ 1298255 (+) |
| G212184 | NA | other | upstream | 2395354 | 433684 ~ 434206 (+) |
| G212006 | NA | other | upstream | 2691549 | 82604 ~ 138011 (+) |
| CI01000050_03807697_03808793 | CLCN5B, CLCN5 | other | downstream | 974148 | 3805143 ~ 3808870 (+) |
| CI01000050_03938328_03956122 | RHOBTB2 | other | downstream | 1119607 | 3931890 ~ 3957044 (+) |
| G214717 | NA | other | downstream | 1276587 | 4107582 ~ 4108280 (+) |
| CI01000050_04591548_04592778 | NA | other | downstream | 1760560 | 4589926 ~ 4593049 (+) |
