G212980


Basic Information

Item Value
gene id G212980
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3158126 ~ 3158455 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU241593
CGCCGTGCGAACGCACAGAGTAGCACTATATCAACTTTCAACACACAAATGTATCTAATATGATAAACAACACTGCGTTACCCGCATGACCGGAAGAAGTGGAAGTGGTGACTGCGGCATTATAAAAGTTCCACTGCTCTCGAGCTGTGTGTCGCGCTCGTCTCTCGTTAGCAGTCGCTCCAGCGGCCTTGTTTCGCTCCAACGGCTTTCAGCCACACCCTGCTTCATACTACAGTAACGTTAATAAATCTTTAATACATTAGCTCATCCATTCTTTTCCACCGGCTGTAAATGTGAAGACAACACCTCCCAGGATTCCATGAAATCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU241593 True 330 lncRNA 0.47 1 3158126 3158455

Neighbor

gene id symbol gene type direction distance location
CI01000050_03129712_03134758 TBX16 coding upstream 23163 3129712 ~ 3134963 (+)
CI01000050_02995539_03115563 CABIN1 coding upstream 42048 2995539 ~ 3116078 (+)
CI01000050_02978801_02980782 CEP78 coding upstream 177344 2978801 ~ 2980782 (+)
CI01000050_02878198_02942065 VPS13A coding upstream 215391 2878198 ~ 2942735 (+)
CI01000050_02852118_02864754 RNF122 coding upstream 293229 2852118 ~ 2865822 (+)
CI01000050_03224108_03230670 NA coding downstream 65602 3224057 ~ 3231161 (+)
CI01000050_03238081_03239214 NPY8BR coding downstream 79262 3237717 ~ 3239314 (+)
CI01000050_03272821_03284544 KCTD9, KCTD9A coding downstream 113764 3272219 ~ 3284762 (+)
CI01000050_03306831_03324064 NA coding downstream 148376 3306831 ~ 3324244 (+)
CI01000050_03392003_03421994 FGFR1A, FGFR1 coding downstream 233548 3392003 ~ 3422913 (+)
G212973 NA non-coding upstream 163452 2994385 ~ 2994674 (+)
G212970 NA non-coding upstream 180690 2977209 ~ 2977436 (+)
G212969 NA non-coding upstream 192047 2963201 ~ 2966079 (+)
G212950 NA non-coding upstream 286963 2870899 ~ 2871163 (+)
G212948 NA non-coding upstream 289331 2868565 ~ 2868795 (+)
G212985 NA non-coding downstream 9312 3167767 ~ 3168197 (+)
G212986 NA non-coding downstream 14169 3172624 ~ 3172954 (+)
G212988 NA non-coding downstream 16249 3174704 ~ 3174999 (+)
G213000 NA non-coding downstream 32064 3190519 ~ 3190739 (+)
G213016 NA non-coding downstream 41331 3199786 ~ 3201642 (+)
G212927 NA other upstream 382993 2774839 ~ 2775133 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 1460718 1691374 ~ 1698973 (+)
CI01000050_01296683_01297763 SELENOK other upstream 1858520 1296365 ~ 1298255 (+)
G212184 NA other upstream 2723920 433684 ~ 434206 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 646688 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 792147 3931890 ~ 3957044 (+)
G214717 NA other downstream 949127 4107582 ~ 4108280 (+)
CI01000050_04591548_04592778 NA other downstream 1433100 4589926 ~ 4593049 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 2249130 5407585 ~ 5409417 (+)

Expression


Co-expression Network