G212986


Basic Information

Item Value
gene id G212986
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3172624 ~ 3172954 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU241599
CGCCATGATAACACCACTACAATGTATTCAGCATTTCTTTACCATTTTTTTGGACACATAACTTAATTTTATACATTAAATAAGCTACCATTGTTCAGAGAGTATGAAATAAACACCCGCCGTCCCGCGGTAATTTGTGGGTAGCCTACCTATTGTGCAGTGGCGGCGCCAGCGACCTGTTCGTCTTGAAAATTACGTAGACACAGTTAGCCAGTTTACACACGCCTGCAGAAATATACATTTGATTACATTTTGGAGAACAGACGGAAGAAGATCTGTCAGTGTGCATTTGATCATTGTTTGTGTTCAGATGTTCAGCGGTTATGAGCGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU241599 True 331 lncRNA 0.41 1 3172624 3172954

Neighbor

gene id symbol gene type direction distance location
CI01000050_03129712_03134758 TBX16 coding upstream 37661 3129712 ~ 3134963 (+)
CI01000050_02995539_03115563 CABIN1 coding upstream 56546 2995539 ~ 3116078 (+)
CI01000050_02978801_02980782 CEP78 coding upstream 191842 2978801 ~ 2980782 (+)
CI01000050_02878198_02942065 VPS13A coding upstream 229889 2878198 ~ 2942735 (+)
CI01000050_02852118_02864754 RNF122 coding upstream 307727 2852118 ~ 2865822 (+)
CI01000050_03224108_03230670 NA coding downstream 51103 3224057 ~ 3231161 (+)
CI01000050_03238081_03239214 NPY8BR coding downstream 64763 3237717 ~ 3239314 (+)
CI01000050_03272821_03284544 KCTD9, KCTD9A coding downstream 99265 3272219 ~ 3284762 (+)
CI01000050_03306831_03324064 NA coding downstream 133877 3306831 ~ 3324244 (+)
CI01000050_03392003_03421994 FGFR1A, FGFR1 coding downstream 219049 3392003 ~ 3422913 (+)
G212985 NA non-coding upstream 4427 3167767 ~ 3168197 (+)
G212980 NA non-coding upstream 14169 3158126 ~ 3158455 (+)
G212973 NA non-coding upstream 177950 2994385 ~ 2994674 (+)
G212970 NA non-coding upstream 195188 2977209 ~ 2977436 (+)
G212969 NA non-coding upstream 206545 2963201 ~ 2966079 (+)
G212988 NA non-coding downstream 1750 3174704 ~ 3174999 (+)
G213000 NA non-coding downstream 17565 3190519 ~ 3190739 (+)
G213016 NA non-coding downstream 26832 3199786 ~ 3201642 (+)
G213019 NA non-coding downstream 38630 3211584 ~ 3211854 (+)
G213074 NA non-coding downstream 273510 3446464 ~ 3545111 (+)
G212927 NA other upstream 397491 2774839 ~ 2775133 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 1475216 1691374 ~ 1698973 (+)
CI01000050_01296683_01297763 SELENOK other upstream 1873018 1296365 ~ 1298255 (+)
G212184 NA other upstream 2738418 433684 ~ 434206 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 632189 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 777648 3931890 ~ 3957044 (+)
G214717 NA other downstream 934628 4107582 ~ 4108280 (+)
CI01000050_04591548_04592778 NA other downstream 1418601 4589926 ~ 4593049 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 2234631 5407585 ~ 5409417 (+)

Expression


Co-expression Network