CI01000050_03272821_03284544 (KCTD9, KCTD9A)


Basic Information

Item Value
gene id CI01000050_03272821_03284544
gene name KCTD9, KCTD9A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3272219 ~ 3284762 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_03272821_03284544.mRNA
GTATAAAAAGGCTCAACCGTAGCATATATCATTTGAAACAATCGTAATAATTTTCTTTCTTTATTTTTTTTTTTAATTTTGTATTGTATCCCCCCACCCACCGAGAGTTTATACAATTCAAATTTCTGCATACGTATTAGAGTATTTGGATTGGTTTTTTACATTTTTACCTCAGCTTGACAGTTTGTTTACAGTCTATCACAGGCTGAGACTTCCAGAATCTACCCCGCAGTCTGTAATGAATGAGTAGTTTGACTGGAGCAGCCCACAGTCACTGAGGTAATCATTTCCCTTGCGTCAAAATTCCATTCTCACCAGGCAAGTTTTTCATTAGAATGACCATCACCACAATTGTGTCCGATTGGTCCGAACCGCAGGCCCAGTTTATGAAACGCGTCCTGTGATTGGTCAATCATCGAGGTCGGCAACAGTATTCGCATTTTGATTTGACAGCTTCTTCGTCGTCATCTTGGTACAATGTAGCTAGGTTGGTTCTTCCTACTCTCTTTACATAGGTATTAGTTTAATACATAGATAAGTTAGCGAGATATTAATTTATTAATATTTGTACAGTTAATACTTTAAATTAGTGCAAACAAAGCATGCGAAGGGTGACGCTTTTTGTCAACGGAACCTCCAAAAATGGCAAGGTTGTAGCTGTTTATGGGACTTTGTCTGATCTTTTGTCAGTCGCCAGCAATAAATTGGGAATCAGGGCTTGTAACCTTTATAATGGGAAAGGTGGTCTTATAGATGACATTGCGCTCATCAGAGATGATGATGTGCTATATGTGTCAGAAGGAGACCCTTTCATCGATCCTCAGAGTGATGGGAAAACGTCAGATGACATCTCAGGATCACACACTGATTGGCTGACGCTGAATATTGGTGGGCGGCTTTTCACAACCACTAGGAGTACTCTTGTGAGTAAGGAGCCTGACAGCATGCTGGCACACATGTTCAGAGAGAAGGATGAATGGGGTAATAAGCAGGATGAACGAGGGGCTTACCTCATTGATCGCAGCCCAGAGTACTTTGAGCCCATCCTGAATTACCTGAGGCATGGCCAGATCATTGTCAATGAAGGAATAAACTTACTCGGAGTGCTGGAAGAAGCTCGATTCTTTGGAATAGAGCAACTGGCAGAGCAGCTAGAAGTCGCCATTAAGAATTCTCATCCACCTGAAGACCACTCTCCACTTTCACGGAAAGAATTTGTTCGTTTCCTGCTGGCTACACCAACCAAATCAGAGCTACGCTGTCAGGGTCTTAATTTCAGTGGAGCGGACCTTTCTCGGCTGGATTTGCGCTATATTAATTTTAAGATGGCAAATCTGAGTCGCTGCAATCTCACCTATGCAAACCTGTGCTGCTCAAACCTGGAGAGAGCGGACCTTTCTGGAGCCAACCTGGATGGTGCTAATCTTCAGGGCGTGAAGATGCTCTGCTCCAACGCAGAGGGAGCGTCCCTTAAAGGATGTAACTTTGAGGATCCCTCTGGGCTCAAGGCCAATCTAGAGGGGGCTAATCTGAAAGGAGTTGACATGGAGGGCAGTCAGATGACTGGTATTAATCTGCGTGTGGCTACGCTGAAGAATGCTAAGCTGAAGAACTGTAACCTGCGAGGTGCTACCTTAGCCGGCACAGATCTTGAGAACTGCGATCTGTCAGGCTGTGATCTACAGGAAGCAAATCTGCGTGGTTCAAATGTGAAAGGTGCCATCTTTGAGGAGATGCTGACTCCACTGCACATGTCCCAAAGTGTGAGATAACGGATTACATTTCTCCGTGCCCGGCAACCACACCAGCCAGCACTCCCTCACCCCGACCCCCTTTCCGTTTCACGCTCCTGTGGAACCGTATGCAATACTAGCACTTGGTTTGCCCACCCCTACTCTTTGAGCTTTACTCTCACGCACTAGTGCACATCCAGGGTCTGTAGTCATGGCCAACATAGCGAAGGCTTATCGTAGAGATTCCAAATATTTTA

Function

symbol description
kctd9a Predicted to act upstream of or within intracellular signal transduction and protein homooligomerization. Orthologous to human KCTD9 (potassium channel tetramerization domain containing 9).
kctd9 Enables cullin family protein binding activity; identical protein binding activity; and protein self-association. Predicted to be involved in intracellular signal transduction; protein homooligomerization; and protein ubiquitination.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_03272821_03284544.mRNA True 1990 mRNA 0.45 12 3272219 3284762

Neighbor

gene id symbol gene type direction distance location
CI01000050_03238081_03239214 NPY8BR coding upstream 32905 3237717 ~ 3239314 (+)
CI01000050_03224108_03230670 NA coding upstream 41058 3224057 ~ 3231161 (+)
CI01000050_03129712_03134758 TBX16 coding upstream 137256 3129712 ~ 3134963 (+)
CI01000050_02995539_03115563 CABIN1 coding upstream 156141 2995539 ~ 3116078 (+)
CI01000050_02978801_02980782 CEP78 coding upstream 291437 2978801 ~ 2980782 (+)
CI01000050_03306831_03324064 NA coding downstream 22069 3306831 ~ 3324244 (+)
CI01000050_03392003_03421994 FGFR1A, FGFR1 coding downstream 107241 3392003 ~ 3422913 (+)
CI01000050_03448766_03465009 LGI3 coding downstream 164004 3448766 ~ 3465867 (+)
CI01000050_03528076_03531738 NA coding downstream 243081 3527843 ~ 3532610 (+)
CI01000050_03552033_03552887 NA coding downstream 266360 3551122 ~ 3552923 (+)
G213019 NA non-coding upstream 60365 3211584 ~ 3211854 (+)
G213016 NA non-coding upstream 70577 3199786 ~ 3201642 (+)
G213000 NA non-coding upstream 81480 3190519 ~ 3190739 (+)
G212988 NA non-coding upstream 97220 3174704 ~ 3174999 (+)
G212986 NA non-coding upstream 99265 3172624 ~ 3172954 (+)
G213074 NA non-coding downstream 161702 3446464 ~ 3545111 (+)
G213113 NA non-coding downstream 265436 3550198 ~ 3550580 (+)
G213153 NA non-coding downstream 387130 3671892 ~ 3672877 (+)
G214496 NA non-coding downstream 443771 3728533 ~ 3728810 (+)
G214500 NA non-coding downstream 447206 3731968 ~ 3732173 (+)
CI01000050_02852118_02864754 RNF122 other upstream 406397 2852118 ~ 2865822 (+)
G212927 NA other upstream 497086 2774839 ~ 2775133 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 1574811 1691374 ~ 1698973 (+)
CI01000050_01296683_01297763 SELENOK other upstream 1972613 1296365 ~ 1298255 (+)
G212184 NA other upstream 2838013 433684 ~ 434206 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 520381 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 665840 3931890 ~ 3957044 (+)
G214717 NA other downstream 822820 4107582 ~ 4108280 (+)
CI01000050_04591548_04592778 NA other downstream 1306793 4589926 ~ 4593049 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 2122823 5407585 ~ 5409417 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location