CI01000050_03448766_03465009 (LGI3)


Basic Information

Item Value
gene id CI01000050_03448766_03465009
gene name LGI3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 3448766 ~ 3465867 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_03448766_03465009.mRNA
CTGCACCACAGAGAGAGAGAGACGAGAACACCGCAGAGTACGCTGAGAAAATCAAATACACACTCATACACGCACCCAGGGAACACCAGTCACTGCCCACTCGTTTTCTGTTCCCTCTGTCATTCGCTTCTGAGCCTAACACCTCCCCTCCTCTCCCGTTCACACCCTGGAGCTTCTTCTCTAGCAGTTTTCCTAATAAGGAAAGGATAAAAAAAACAGGATCAGATCCCTCTCTCCAGCCGCCTGTGTTTCTTCAGGAGAAGAGAAGGTGGAAGATGGTGGAAGCAAGGCCCAGGCGGACTCTACGATGGCCAGACTGGCGGCTGTCTGTTTGCCTGCTGCTTTTCTGTATGTTTGGGAACACATTGGGCCGCAAAGCTCCCAAAACCCCACGATGTCCAACCACCTGCTCCTGTACCAAAGACAGTGCCTTCTGCGTGGACACCAAAGCCATTCCCAAGAGCTTCCCACCAGGAATCATCTCCCTGACTATGGTGAACGTTGCCTTCACAGAGATTCCTGAAGGAGCTTTTTCCCACATGCACCTACTGCAGTTCCTTAATTGTGACGTTGATGATTACCTTAGAAAATATTTCCCCTCAATCAGCCCTCAGTTTGTGAAAACCTACAAAAATCATCTTTACAGTAATGATCTTACAGTGGGACAAGTCACGTTTTTGTGTGTAACTGTAGACTCCCATCCATTGCTGTTGAACTCAAACACATTCTCTCTGATTTCTGATGATGCTTTTGCTGGTCTTGGACACCTGCAGTACCTGTCTCTATCCAACAACAACCTGCAGGTTCTTCCCAGAGATCTCTTCAAACACCTGGACATCCTCACAGACCTAGACCTGCGAGGGAACTCGTTCCGTTGTGACTGTAAGATCAAGTGGTTGGTTGACTGGATGGAGAAGACCAACACCTCCGTTCCAGCCATATACTGCGCCAGCCCTTTTGAGTTCCAGGGTCGACGCATCCATGACCTCACACCACGTGACTTCAACTGCATAAGTGCAGATTTTGCAGTATATGAGATATACTCGTTCCAGTCTCTGTCTGTGGAGTCATACGAGTTTAACAATGACCAGTACATAGTTTTCGCTCAGCCCAACACTGGAATCTGCACCGTGTTCATTTGGGATCATGTGAACATGCTTTTCAAGACACATTACAACATCACATCTCGTTCTGCAGTCTACTGTAAGCCTGTGGTTATCAACAACACTCTCTACATGGTTGTGGCTCAGCTCTTTGGAGGATCCCACATCTACAAATGGGAGGAAGGACCATTGCGTTTCGTCAAAATCCAGGACATCGACACCACTCGTGTCCGTAAACCCAACTTCATAGAGACTTTCCAGATTGAAGGGGACTGGTATTTTGCTGTAGTCGACAGCTCCAAAGCTGGATCCACCAGCCTGTACCGCTGGAACAGTAACGGCTTTTACTCGCACCAGTCTCTCCATCCCTGGCACAGAGACACTCACATCGACTTCCTCGAGGTGGACGGCAAACCTCGTCTAATTCTCTCTAGCACCTCGCAGCCCCCGGTGGTGTATCAGTGGAACCGCAGCCAACGCCAATTCGTCTACCACTCGCAGATCACTGATTCAGGTGATGTGCAGATGGTGAAGCACTTCTGGATACGAAAAGTGCTGTATCTCTGCCTCACGCGCTTCATAGGAGACTCGAAGATCCTGCGCTGGGACAACCAGCGCTTTGTGGAGATTCAAACGCTGCCGTCACGTGGCTCAATGGCCGTGTATCCGTTCAGCGTTGGAGTGAGGCAGTACCTTCTGCTGGGGAGCGATTATTCGTTCTCTCGTATTTATCTGTGGGACGACCTCACTCAAAGGTTCCAGCCCTTTCAGGAACTGAACATGCTTGCGCCTCGAGGGTTCAGCCTGGTCTCTGTTGACAATAAGGATATTCTGTTAGCGGCCAGTTTTAAAGGAAAGACCATGGCGTACCAGCATCTCGTGGTGGACCTCAGTGCCAAATAGGCTGCTGGAGACGTTTTTCTGGGGATTCAGGCTGCAAGTGCTTAAAGTGCCCCTATTATGCAATTTGAAAGGTTCCTAATTATGTTTTGGAGGTCTCCTGCAACAGGTTTACATGCATCAAAGATTAAAATACACTCTCATTTTCTCATAATACACATCACCACATTTTTCAATGATTCTCAAACAACTCGTCGGATGAATCAGTGTCTCTAAATGCTTCCAAATGCCCATTACCAGAACTGATTCAGCTCCGGAGGCTTCCTAAAATTCAGCGATTGTACACACTGTAAAGACAGTAATGACGGTGTTGATTTTATTATATCAATCCGAGCGCGAGTCCGATGATGAAACATTGGAAGAACTAGTTATTCAACCTAAACCTCCATCACAAGAACGAGTAGGAGTTTTCTCAGTGATACACTACTCAGTATGACATATATTATGAGATGTTGCAACTGTAATTCCTCTGCATCAGCATTAACAAGTGTATGTCAATCAACAAACTGATGTGTATATTTCTAATTTATTGCGGTACATATTAGGGGTTGCACCGACTAATCGACTAGTCGACTTTAACGCTCTGCCATGACGCTTTCAGCATGATGTCGACTAGTCGCTGGTCATGGCCTATAGAGGGCACAACAGGAAAATAAATCTTTAAAGTCCACCTTTACGCTCCGTATCCTACAGTTAATGACAAATAAATGCATACTCTGAGAGCGCTCCACAGCATATGTTTGATTATACCATCTGGATTCTCAATATTGATCGGGTGAATGCACGTTTTAAACAGCTTTTTGTACAGGTACGTTAATCGACGTTCTGAACTGCGCTGCTACACACACACATCATGTGCAA

Function

symbol description
lgi3 Predicted to be involved in regulation of exocytosis. Predicted to be located in extracellular region. Predicted to be active in synaptic vesicle. Is expressed in head; hindbrain; and spinal cord. Orthologous to human LGI3 (leucine rich repeat LGI family member 3).

GO: NA

KEGG:

id description
K19999 LGI3; leucine-rich repeat LGI family member 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_03448766_03465009.mRNA True 2864 mRNA 0.47 9 3448766 3465867

Neighbor

gene id symbol gene type direction distance location
CI01000050_03392003_03421994 FGFR1A, FGFR1 coding upstream 25853 3392003 ~ 3422913 (+)
CI01000050_03306831_03324064 NA coding upstream 124522 3306831 ~ 3324244 (+)
CI01000050_03272821_03284544 KCTD9, KCTD9A coding upstream 164004 3272219 ~ 3284762 (+)
CI01000050_03238081_03239214 NPY8BR coding upstream 209452 3237717 ~ 3239314 (+)
CI01000050_03224108_03230670 NA coding upstream 217605 3224057 ~ 3231161 (+)
CI01000050_03528076_03531738 NA coding downstream 61976 3527843 ~ 3532610 (+)
CI01000050_03552033_03552887 NA coding downstream 85255 3551122 ~ 3552923 (+)
CI01000050_03557372_03567755 CHMP7 coding downstream 91460 3557327 ~ 3567979 (+)
CI01000050_03573096_03586434 ENTPD4 coding downstream 107229 3573096 ~ 3587311 (+)
CI01000050_03599274_03618237 SLC25A37 coding downstream 133407 3599274 ~ 3619040 (+)
G213019 NA non-coding upstream 236912 3211584 ~ 3211854 (+)
G213016 NA non-coding upstream 247124 3199786 ~ 3201642 (+)
G213000 NA non-coding upstream 258027 3190519 ~ 3190739 (+)
G212988 NA non-coding upstream 273767 3174704 ~ 3174999 (+)
G212986 NA non-coding upstream 275812 3172624 ~ 3172954 (+)
G213113 NA non-coding downstream 84331 3550198 ~ 3550580 (+)
G213153 NA non-coding downstream 206025 3671892 ~ 3672877 (+)
G214496 NA non-coding downstream 262666 3728533 ~ 3728810 (+)
G214500 NA non-coding downstream 266101 3731968 ~ 3732173 (+)
G214501 NA non-coding downstream 272324 3738191 ~ 3738542 (+)
CI01000050_02852118_02864754 RNF122 other upstream 582944 2852118 ~ 2865822 (+)
G212927 NA other upstream 673633 2774839 ~ 2775133 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 other upstream 1751358 1691374 ~ 1698973 (+)
CI01000050_01296683_01297763 SELENOK other upstream 2149160 1296365 ~ 1298255 (+)
G212184 NA other upstream 3014560 433684 ~ 434206 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 339276 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 484735 3931890 ~ 3957044 (+)
G214717 NA other downstream 641715 4107582 ~ 4108280 (+)
CI01000050_04591548_04592778 NA other downstream 1125688 4589926 ~ 4593049 (+)
CI01000050_05407682_05409108 FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 1941718 5407585 ~ 5409417 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036785 lgi3 coding NC_007119.7 CM002892.2 51375308 ~ 51404806 (-)