CI01000050_01803081_01804190 (B3GALT4)


Basic Information

Item Value
gene id CI01000050_01803081_01804190
gene name B3GALT4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000050
NCBI id null
chromosome length 7556436
location 1800608 ~ 1806958 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000050_01803081_01804190.mRNA
ATATATATTCACGTCAAGCAATGTTTGCAAACAGTAACTGTTTTGTCAATGTTTTTTTAATGTTGTTGTAATTGACTGCAAATTCAGCATGTACAAGCATATCCAACAGTAACAGCATTAGCCCAGGCTGTAACTCCAACAAACCAGATGCTGCAGATGCATAGTTAGAACTGCGGGACAAATGTGTACCAACCTGTGGTTGGTGACCGTATGAATATTTTTTATTATTGAAAGCTGTTATACTCCTAATATGCACTACCGTTAAAAGGTTTGGGGTGCTCACCAAGGCTGCATTTATTTGATCAAAAATACAGTATAATTGTGAAATATTATTACAATTTTTAAAACATTGATAATCAGAAATGTTTCTTGATAATCAAATCATCATATTAGAATGATTTCTGAAGGATCATGTGACACTGAACACTGGAGTAATGATGCTGAAAATTCAGCTTTGATCATGAAAATACATAGAATACATTTTTCACACAGAAAAGAGCTGTTTTAAAATATAATAATATTTCACTGTTTTCACTATATTTTGATCAAATAAATACAGCTTGGGTGAGCAGAAGAGACTTCTTTCAAAAACAAAAAATCTTACTGACCCCAAACATTTTGAACGGTAGTGTATACAAGTTAAATCGGTAACGCTTTAGAGTACTGTTCTGAATAAACAGTCTGCTCATGAATAACTGCACAGGAACAAAAGAGTATCGCATTATTAACACTCTAGTAACTATTATTAACTAACAAGAAATTCTGATTAATGAATTAGCAAGTAATAACGCTCAGTCGAATGTGGTCGTTCACTAGTAGCTAATTGCTACTAGTGAACAAATTGTAATCAGTTATTGATTCTAAACTACATGACAATTCACATTTCACACTGCTTATACCATACCTGGGGTTGACAGTTAATCCTGGGTATTCATAAACTGTCGTTTCACTCTGCACATTCCTAAACCCAGGGTTTAAGTCCTTATTTGCATATTTGTGGTGTCAGTGTTACTGACTGGACAAACGCAGCATGTGGCCTGTTTACATAAAGGCTAGCATTGCACATTGCTGACTGTAATATACATTTTTTTTCTAAATGAACTTTTCAAACTATAAAGGTAATAATGATGGTCTCTTCTTCACTTCAATTGTCGCATTTTCCATCGCCGTTTGACATTTTTCCTATCATACTCAGAAACGACTGTTAAAGGCTTTTCGTACTGCACTTAACCCTGGGTTATCGTAATTCTAAACACCATTTTTAACCCTGGGTAAAGGAGCGTTTCAAACTTGTAATTTTGAAGCGGGGTTAGCACCGCTTTTTACCCAGGGTTATGAAACCCTTCAGTGTTTGAGAGGAAAAATGTCAAATGATGACAGAAAATGCAACAATTTGAGTGAAGAAGAGACCGTATCATTCTTGCATTTACAGTCCGAAATGTCCATTCAGTATAAACTCAATAGTACATTATGAGGTGAGGATGCACAATGCTAGAGCTAGTCTATGTAAACAGGTCACGTGCTGCGTTTTTCCAATCGTTGACACTGATGCCGCAAATATGCAAATAAGAACGTTAACCCAGGGTTTAGGAAAGTACAATGTGAAATGTCAGCTTATGAATACCCAGGATTAATTGCTAACCCTGGGTAAATTATGAGCAGTGTGAAACGTGAAGCAAGAAAGCGGCTAAAGCAGTGCTAACCCTGCTCCAGAGCAGGATTTCATAACCCCAGGTAAAAAGCGGTGCTAAGTGTGAAATGCTCCATTTCCCGGGGTTAAAAGCGGTGTTTAAAAGCGGTGTTTAGAACGATGATAATCCGGGGTTAAGCGCACTGTGAAAATCCCTATAAACTATTATTTTTTAGTCCTCCCAGAGGACTACTAAGGACGATTGTATACACATTCATAACTAACATGAATAATGCATAATATATAATTAATTCTAAAGTGAAGGTCATGGTAACCCACTAGTAATGACTGAAGTATTACCAAATCCTTCAGAAGGAACTACTAATTATTTGGATCAGTATTCTAAAATGAGAAACATGATAACTCTCTGATATTGACTGTTCTCTGGGAGGAATGAAAGAAAAGGTAATTACTGATTAGCTAATAGTGAACGACCAACTGAGCACTATTACCGACTAATTCATTAATCAGAGTTTCTTGTTAGTCAATAGTAGTTACTAGAATGTTAATAATGCATTACTCATTTGTTCCTGCGTACTTATTTATTAATGAAGGATCAGTATTCTAAAGTGTTACCGCTGAATCATATCAACGTTTGCTCTAGATATCAGCCATTATTAATTACTTTTCTTTTTTTCCTCTTGCAGTTGGTGGTGCAACAGTGCAGCACTGGACACCTTGCAATGGTCTTTTTGTCCCTTCACTGGATCTAAATGTACACATTCAGTGTATAATCAAACCCAAAATGGAGGAGTAAAGAAGTTTTTCCTGTGATCTGTAAAAATGCTAGTGCATAATTTTAGGATCTTTAAGGGTCGCATTGGGAAGAGAGGAGGCCATTTAGGGATCATCCATTACCTCTCCATAATAGTCTTATGTGGTTCCCTGCTTGCTCTACTCTTTTTTGACGTCATTGAATTGTGGGTGACCTCGCTGGGCATGAGCAAAGAAGTTCTTCGTGTAGTGGACCTTCCGCACAGTATTCCTCCAACCCGTTCGGAAGAGTACCTGCTTATGCCTAGCATCCACGTCTGCCAACGTGCCAAACCTTACCTCATCACTTTGGTGGCAACTGCACCTCAAAACAGAAAGGCCCGCCAGGCCATTCGTGACACCTGGGGTGGGGAAGTACAAATCAGAGGTCACCGAGTCATGACCCTCTTCATTGTCGGTCAGCCATCTGACCCAGTTCTTGGCAAAGAATTGGTGGAAGAGTCAAAGGAGCGCGGGGACCTCATACAGGGTCGCTTCATCGACTCCTACGGCAACTTGACCCTAAAAACTCTGTCTATGCTGGGCTGGGCACGCCGTTTCTGTCCACAGGCTCGCTATCTGGCGAAGGTAGATGATGATGTACTGTTCAACCCTAGTGCGCTGCTGCAGTATCTTAACCACAGCGTTAAAACACCAGAAAACGAACTCACCGAGCTTTATCTGGGACGTGTCCACATGCAGGTCGCACCGGACCGCAATCCCGCCAGCAAACACTTCATGTCAGAAACCACATACGCTGGTGTGGTCTTTCCTGATTACTGCAGCGGGACGGCGTATGTGCTTTCTCGACCAGCTTTGCTGAAGCTGTCTCTAGCAGCTGTTGCCATACACTTATCCAGTCCATTACCTCCAGAGGATGTGTTTGTAGGCATTTGTGCTCACAGAGCAGGCATTACACCGACCCATTCTCCACTCTTCTCCGGAGGACCAGCTGTACCATACAGCCGTTGTTGCTACCAAACTATGGTGTCTGTCCACCATACCAAGCCAGGGGACATGGTGCACTACTGGACGGAGGTGCACTCCACTGCCCCATGCTCGTGGTTGGGTATGCGGACATCTTTTGGTGTCTGTAAAGTGAGAGCACTTCTCGGGACACTGTTGGGGAGAGACTCCTGAAATGAAGATACATTGAATATGAAAAGCCAAAGGGAAAAGCACATCTTTAGTTACTTAGGCCCTGTTTACACCTGGTTTAAGATGCGTTTTGGTTGATCGGACACATTCCCGTTTACACCTGGTGTTTTACTCCATCTTTTTTGTCCACTTTCAATCACTTTTGTCCTGATTTCTTCCAGGGGAGGGTCTATGGTCAGACCTTTTTTAGATCTTTCGATCTAGTTGACAGAATAAGCTTGCGCATTTTACATATGAATGCGAAAGGAGACGACGGAAAAACGCAGTGGTGTGTGTTAGAAATCAGTAATGGTGAGAGAACATTGTGCTTGGTACATTTTTTTGTCTTCAAACTAAACTTGGTTCTTCATCTAACAAAGTTTAAAGGGTTAGTTCACCCAAAAATGAAATTTCTGTCATTAATTACTCACCCTCATGTCGTTTCACACCTGTAAAACCTTTGTTCATCTTCAGAACACAAATTAAGATATTTTTGATAAAATCTGAGAGGTATATGATTCGTCCATAGACAGCAATATAATCAACACTTTCAAGGTCCAGAAAGGTACTAAAGACATTGTTAAAACAGTCAATGTCACTGCAGAGGATGTGTTCAACCTTAATGTTATGAAGCGACGAGAATACTTTTTGTGCGCCAAAGCAAAAATAGCGACTTTATTTAACAATATCTTCTCTTCTGTGGCATTCTCATACGTTGTTTATGTCCAGCGCTTCCAGGTTCTACGTCAGAACGACTCATTATTGTCCGGCTCCTGCGTCAGAATCACACGCATGTGTTGTGCTGATCACGTGACCAGCTCTGGCCAATACTGAGCCGGCGTTCTGACATAAACACTGAAGCCTTCACTGTGATTACTGCGTCACCTGCATAAGGATAATGACAGGGAAGAGAAGAGATTGTTGAATAAAGTCGTTATTTTTGTTTTGTTTTTGCGCACAAAAAGTATTCTCGTCTCTTCATAATATTAAGGTTGAACACTGCAGTCACATGACTGTTTTAACGACATCTTTATTACCTTTCTGGACCTTGACAGTGTCGGTTAAATTGGTGTCTCTGGACGAGTCATATACCTCTAGGATTTCATCAAAAATATCTTAATTTGTGTTCTGAAGATGAACAAAGGTCTTACGGGTGTGGAACAACATGAGGGTGAGTAATTAATGACAGACATTTCATTTTTGCGTGAACTAACCCTTTAAATCCCATCTGGCTAGTGCGCTTTCCCATTATGTTTACGCATTAGGTCAGTAGGTGGAGAGTAGGCAGTCTGTTCGAATGCATTCAACCACATGAGCGTCTACACTACGAAAGCAATCCAGTCGAATGCATTTTCAGCTACCTCTGGAAGTGGTAAAAAGTGGACAAGCTCAAGCTCACTGTGTTTACACCTGTATTTAGCGTCATCCACTTGTGATCCGACCAACCAAAACGCATCTTAATACCAGGTGGAAACAGGGCCAAAGATATTATGCACTGAAAATTTATTTTTATTATACAATACTTGAATTTATGTTCACAGCTTACCCAGCATGTGCCTTTCACAATTACACTTCTATACATCTAATATATAATTAGAAACTCAGCTTATGTAGAACAATATGCACATTGAAGACCAGGAGTCAAAGATGAATTTGATTCAGTTGACAGAGAGTTTCTTGAACTAACTTAGAATACAGAAACACTAGTACTGATTAACATTTACCAAATCAACTGACATTATTTCTACAAGTTCTAAAGATTCTTATATTTAATTCTAGCAATGAAAAACTCTCATTTTGTTAATGCATATACATTAATATGATTCCTGTGTGCAAATTTTTTATGTGATTTAAGTGCAAGATGCAAAAGAGAACTAAATTCGGTACTCTCTCGCTGTTTTCTGTGTGCACAAAAAGTCGCCTTTCATATAGTGTGCAAATGCTTAATTAAGTTCTCTTTCACGCCTTGCACTTGAACGGACAAATATACATAAAATCATGTCAAAATATCCTTGTAAACAGTTGAGAAAGAAAACTCATGTGCAACAGTATATTGGATCCATGCATTTGGTCTTAAAGTGACAGCGGCCTAATATCCTGCTGCAGCCTGTGTCATTAATGTAAAGAACAAAAGACAGAGAAGGTCTCTCACTGTACTTGACTGAATCACTTTTGTGGTTTTAATAAGTATTAATCTATATATTGTTTATAAAGTGAAGACTATGCAGGGTTATTTTACATTTGATTTCAGTTTCTGTACCTGAATAGCTAGACCTGTCAGTAAAACTTAAACCACTGTTCAGTGTATTAGTGAAGGTTGAGATTAACATTAGCTATGATTAATAAATGCTGTAGAAGTACTATTGTTCATTGTTAGTTCATGTGAACTAATGCAGTTAACTAATGTTAACAAATGAAACCATGTTGTAAAGTCTTACCAAGACACATTGATTATGGTTCATATAATCAATGAATTAAATGGATAGTTCACTTAAAAATTCTGTCACTCTCATGTTGTTACAAACAAAGACTTCCCTTCATCTTTGGAACACAAATGAAAATGTTTGTCCACACAACTAAGCCTCAAAAAGCACATGAAGACATGGTAAAACAAACAAACATACAGCACATCAAATATGGTTAACGGAAGCTCAACTTGTGCATGCTTGACTTACAAGAACAAACCTCAGTAGTTTGCATGCATCAAGTCTGAGCTTCCGTTGATCATATCTGATGTGCTCTGTGTTTTTGGCTGTTGCGGGGAACCTCCA

Function

symbol description
b3galt4 Predicted to enable UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Orthologous to human B3GALT4 (beta-1,3-galactosyltransferase 4).

GO:

id name namespace
GO:0008921 lipopolysaccharide-1,6-galactosyltransferase activity molecular_function

KEGG:

id description
K00715 B3GALT4; ganglioside galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000050_01803081_01804190.mRNA True 6351 mRNA 0.39 1 1800608 1806958

Neighbor

gene id symbol gene type direction distance location
CI01000050_01701779_01712905 RBSN coding upstream 87530 1701614 ~ 1713078 (+)
CI01000050_01691894_01697791 SULT1ST2, SULT1ST3 coding upstream 101873 1691374 ~ 1698973 (+)
CI01000050_01674592_01678560 SULT1ST1, SULT1ST2, SULT1ST3 coding upstream 122048 1674592 ~ 1678560 (+)
CI01000050_01662474_01662718 NA coding upstream 137872 1662474 ~ 1662736 (+)
CI01000050_01644444_01659372 GABRD, GBRD coding upstream 141196 1644444 ~ 1659412 (+)
CI01000050_01877310_01902523 ADGRD2 coding downstream 70352 1877310 ~ 1902773 (+)
CI01000050_02211327_02213220 NA coding downstream 403836 2210794 ~ 2213489 (+)
CI01000050_02268620_02283626 NADK, NADKA coding downstream 461662 2268620 ~ 2285331 (+)
CI01000050_02290349_02305843 WDR46 coding downstream 481969 2288927 ~ 2306023 (+)
CI01000050_02308087_02311804 NA coding downstream 500281 2307239 ~ 2311898 (+)
G212564 NA non-coding upstream 47300 1750024 ~ 1753308 (+)
G212444 NA non-coding upstream 52585 1734059 ~ 1748023 (+)
G212450 NA non-coding upstream 54538 1733004 ~ 1746070 (+)
G212560 NA non-coding upstream 77533 1722871 ~ 1723075 (+)
G212592 NA non-coding downstream 47755 1854713 ~ 1854923 (+)
G212596 NA non-coding downstream 59600 1866558 ~ 1866975 (+)
G212609 NA non-coding downstream 123201 1930159 ~ 1931975 (+)
G212430 NA non-coding downstream 149073 1956031 ~ 1988166 (+)
G212621 NA non-coding downstream 253184 2060142 ~ 2064799 (+)
CI01000050_01296683_01297763 SELENOK other upstream 501002 1296365 ~ 1298255 (+)
G212184 NA other upstream 1366402 433684 ~ 434206 (+)
G212006 NA other upstream 1662597 82604 ~ 138011 (+)
CI01000050_00012155_00026251 NA other upstream 1774196 12079 ~ 26412 (+)
G212927 NA other downstream 967881 2774839 ~ 2775133 (+)
CI01000050_02852118_02864754 RNF122 other downstream 1035861 2852118 ~ 2865822 (+)
CI01000050_03807697_03808793 CLCN5B, CLCN5 other downstream 1998185 3805143 ~ 3808870 (+)
CI01000050_03938328_03956122 RHOBTB2 other downstream 2143644 3931890 ~ 3957044 (+)
G214717 NA other downstream 2300624 4107582 ~ 4108280 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036808 b3galt4 coding NC_007119.7 CM002892.2 53107380 ~ 53108207 (-)