XLOC_036808 (b3galt4)


Basic Information

Item Value
gene id XLOC_036808
gene name b3galt4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53107380 ~ 53108207 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071857
TTAGTAGCAACTGCACCTCCTAATAGAAAGGCTCGCCAGGCAATCCGGGACACTTGGGGTGGGGAAGTGCACGTCAGAGGTCACCGGGTCATGACCCTCTTCGTTGTAGGTCAACCAACAGACCCGGTTATTGGAAAAGAGCTAATCGAAGAATCAAAAGAGCGCGGGGATCTAATACAAGGTCGCTTCACTGACACATACACCAATTTAACACTTAAAACGCTGTCTATATTAGGATGGGCGCGCCGCTTCTGTCCACAGGCGCACTATGTTGCTAAAGTAGACGATGATGTGATGTTCAACCCAAACGCGCTGCTTCAATATCTCAACCTGAGCTTTAAAAGAGACGAGAGCGAACTTCTTGAGCTTTATTTAGGTCGTGTTCATATGCAGGTCGCACCCGATCGCAATCCCGCCAGCAGACACTTCATGTCGGAGACTGCATACGCTGGGATGGTCCTCCCGGATTACTGCAGTGGGACGGCGTATGTGCTTTCTCGCTCAGCTTTGCTGAAGCTGTCCCTAGCAGCGGTTGCCATAAATCTACCCAAACCTTTGCCCCCGGAGGATGTGTTTGTAGGCATTTGTGCTCACACCGCAGGAATCAATCCAACCCATTCTCCATTCTTCTCTGGAGGACCGGCCGTACCGTACAGCCGCTGCTGCTACCAGACGATGGTGTCCGTCCATCATACCACACCAGCTAATATGTTAAACTACTGGACGGACATGCACTCCTCCGGCCCGTGCTCATGGTTGGGTGTGCGGACGTCTTTAGGTGTCTGTAAAGTAAGGGCACTTCTTGGGACACTCTTGAGGAGGGATTAA

Function

symbol description
b3galt4 Predicted to enable UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Orthologous to human B3GALT4 (beta-1,3-galactosyltransferase 4).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG:

id description
ko00604 Glycosphingolipid biosynthesis - ganglio series
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-081104-482 Predicted to enable UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Orthologous to human B3GALT4 (beta-1,3-galactosyltransferase 4).

Ensembl:

ensembl_id ENSDARG00000076218

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071857 True 828 mRNA 0.51 1 53107380 53108207

Neighbor

gene id symbol gene type direction distance location
XLOC_036806 nr6a1a coding downstream 63080 52888295 ~ 53044300 (-)
XLOC_036807 NA coding downstream 171910 52933059 ~ 52935470 (-)
XLOC_036805 NA coding downstream 224604 52877822 ~ 52882776 (-)
XLOC_036804 nr5a1a coding downstream 236324 52833443 ~ 52871056 (-)
XLOC_036803 fgf17 coding downstream 362212 52732107 ~ 52745168 (-)
XLOC_036809 rbsn coding upstream 42765 53150972 ~ 53169445 (-)
XLOC_036810 sult1st4 coding upstream 62795 53171002 ~ 53179683 (-)
XLOC_036811 gabrd coding upstream 76872 53185079 ~ 53198154 (-)
XLOC_036812 CU914536.1 coding upstream 248572 53356779 ~ 53356896 (-)
XLOC_036813 NA coding upstream 356011 53464218 ~ 53467703 (-)
XLOC_036801 NA non-coding downstream 475896 52627507 ~ 52631484 (-)
XLOC_036797 NA non-coding downstream 702234 52401657 ~ 52405146 (-)
XLOC_036796 NA non-coding downstream 796753 52297701 ~ 52310627 (-)
XLOC_036822 NA non-coding upstream 673274 53781481 ~ 53781852 (-)
XLOC_036824 CABZ01090219.1 non-coding upstream 733095 53841302 ~ 53851585 (-)
XLOC_036829 NA non-coding upstream 953490 54061697 ~ 54068296 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_01803081_01804190 B3GALT4 coding CI01000050 null 1800608 ~ 1806958 (+)