XLOC_036811 (gabrd)


Basic Information

Item Value
gene id XLOC_036811
gene name gabrd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53185079 ~ 53198154 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071862
CAGGGCCATGCTGAGTGATATCGGGGATTATGTCGGCACAGATATTGAAATATCCTGGCTGCCAAATCTGGATGACCTCATGAAAGGTTACGCTCGAAACTTTCGTCCAGGGATCGGAGGACCGCCTGTGAACGTCGCCATGGCCATTGAAGTGGCCAGTATTGACCACATCTCAGAAGCCAACATGGAATACACCATGACAGTGTTTCTGCGTCAGAGCTGGAGAGACGACCGTCTGTCCTACAACCACACGAACAAAACTCTGGGTCTGGACAGCCGCTTCGTGGACAAACTCTGGCTTCCGGACACCTTCATCGTCAACGCCAAGTCCGCCTGGTTTCATGACGTGACGGTGGAGAATAAACTCATACGCCTGCAGCCTGACGGAGTCATTCTCTACAGCAGTCGAATCACATCTACAGTCGCGTGTGATATGGATCTCACCAAATACCCCATGGATGAGCAGGAATGCATGCTAGACCTTGAAAGCTATGGCTACTCTTCAGAAGACATTGTGTATCACTGGTCAGAAAGTCAGAAGCTCATCCATGGCCTGGACAAACTGGAGCTTTCCCAGTTCACCATCACCGACTATCGCTTTGTGACAGAGATGATGAACTTTAAATCTGCGGGCAGATTTCCACGTCTTAGCCTGCGTTTCCAGCTGAGGAGGAACCGAGGAGTTTACATCATCCAGTCCTACATGCCGTCCATCCTGCTGGTGGCCATGTCCTGGGTTTCATTCTGGATCAGCCAGTCCGCCGTGCCAGCGAGAGTGTCTTTAGGAATCACGACGGTTCTGACCATGACGACGCTGATGGTCAGTGCTCGCTCTTCACTGCCTCGCGCTTCTGCCATTAAAGCTCTGGACGTGTATTTCTGGATCTGCTACGTCTTTGTGTTCGCTGCTTTGATCGAATACGCCTTTGCTCACTATAATGCAGACTACAGCAAGAAGGAGAAAGCCAAAGTCAAGACCAATAAGAATGCAGAGTCGATGGTGAAGAATGGAAAGCAGGCCATGGTTCTGTTTTCTCTGTCGGTGGCGGGCATGAACCAGGGTCTCCTGATCTCCAACAGGCAGAGCAGATCACACAGAGCCTCCGACGCCGCCGCCGCCGCTGCAGATCCGCATGAAGAGACTGAGACTCGCAGCGCTACGAGCCGAAGAGCGCAGAAAGAAAGCAGCGAGGAGAAGAAATGCTGCAAGTGTAAACCCATAGACGCCGACACCATCGACATCTACGCTCGTGCCGTCTTCCCGTTCACCTTCGCCGTGGTCAACGTCATCTACTGGGTGGCGTACACCATGTAGA
>TCONS_00071863
CCGGAGGCTGATTTGCTTGTGTTTCTCCACAGGGCCATGCTGAGTGATATCGGGGATTATGTCGGCACAGATATTGAAATATCCTGGCTGCCAAATCTGGATGACCTCATGAAAGGTTACGCTCGAAACTTTCGTCCAGGGATCGGAGGACCGCCTGTGAACGTCGCCATGGCCATTGAAGTGGCCAGTATTGACCACATCTCAGAAGCCAACATGGAATACACCATGACAGTGTTTCTGCGTCAGAGCTGGAGAGACGACCGTCTGTCCTACAACCACACGAACAAAACTCTGGGTCTGGACAGCCGCTTCGTGGACAAACTCTGGCTTCCGGACACCTTCATCGTCAACGCCAAGTCCGCCTGGTTTCATGACGTGACGGTGGAGAATAAACTCATACGCCTGCAGCCTGACGGAGTCATTCTCTACAGCAGTCGAATCACATCTACAGTCGCGTGTGATATGGATCTCACCAAATACCCCATGGATGAGCAGGAATGCATGCTAGACCTTGAAAGCTATGGCTACTCTTCAGAAGACATTGTGTATCACTGGTCAGAAAGTCAGAAGCTCATCCATGGCCTGGACAAACTGGAGCTTTCCCAGTTCACCATCACCGACTATCGCTTTGTGACAGAGATGATGAACTTTAAATCTGCGGGCAGATTTCCACGTCTTAGCCTGCGTTTCCAGCTGAGGAGGAACCGAGGAGTTTACATCATCCAGTCCTACATGCCGTCCATCCTGCTGGTGGCCATGTCCTGGGTTTCATTCTGGATCAGCCAGTCCGCCGTGCCAGCGAGAGTGTCTTTAGGAATCACGACGGTTCTGACCATGACGACGCTGATGGTCAGTGCTCGCTCTTCACTGCCTCGCGCTTCTGCCATTAAAGCTCTGGACGTGTATTTCTGGATCTGCTACGTCTTTGTGTTCGCTGCTTTGATCGAATACGCCTTTGCTCACTATAATGCAGACTACAGCAAGAAGGAGAAAGCCAAAGTCAAGACCAATAAGAATGCAGAGTCGATGGTGAAGAATGGAAAGCAGGCCATGGTTCTGTTTTCTCTGTCGGTGGCGGGCATGAACCAGGGTCTCCTGATCTCCAACAGGCAGAATCCGCATGAAGAGACTGAGACTCGCAGCGCTACGAGCCGAAGAGCGCAGAAAGAAAGCAGCGAGGAGAAGAAATGCTGCAAGTGTAAACCCATAGACGCCGACACCATCGACATCTACGCTCGTGCCGTCTTCCCGTTCACCTTCGCCGTGGTCAACGTCATCTACTGGGTGGCGTACACCATGTAG
>TCONS_00071864
CTCTTTTGCTctcagaactgcattaatccttcgtggcagagattcagcaagctactggaaatattcctcagagattttgctccatattggcatgatagcatcacgcagttgctgcagatttgtcggctgcacatccatgatgccaatctcccgttccaccacatcccaaagctgctctattggattgagctctggtgactgtggaggccatttgagtacagtgaactcatcgtcatgttcaagaaaccagcctgagatgacTGAGCTTCATGACATtgatacaaacacatacataaaaacatgcTTACATGTAAAATATTCCAACATATATAATCCTGTGTCATTTCAATTCTTTTAAAATGATGTGTTTTCCTCCTGATGTTGGTGTTCAGATGGCTACTCTTCAGAAGACATTGTGTATCACTGGTCAGAAAGTCAGAAGCTCATCCATGGCCTGGACAAACTGGAGCTTTCCCAGTTCACCATCACCGACTATCGCTTTGTGACAGAGATGATGAACTTTAAATCTGCGGGCAGATTTCCACGTCTTAGCCTGCGTTTCCAGCTGAGGAGGAACCGAGGAGTTTACATCATCCAGTCCTACATGCCGTCCATCCTGCTGGT

Function

symbol description
gabrd Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in idiopathic generalized epilepsy 10. Orthologous to human GABRD (gamma-aminobutyric acid type A receptor subunit delta).

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1902711 GABA-A receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004890 GABA-A receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-081105-170 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in idiopathic generalized epilepsy 10. Orthologous to human GABRD (gamma-aminobutyric acid type A receptor subunit delta).

Ensembl:

ensembl_id ENSDARG00000059763

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071862 False 1316 mRNA 0.52 8 53185079 53195500
TCONS_00071863 False 1302 mRNA 0.52 10 53185080 53198154
TCONS_00071864 True 624 lncRNA 0.44 2 53189289 53190760

Neighbor

gene id symbol gene type direction distance location
XLOC_036810 sult1st4 coding downstream 5396 53171002 ~ 53179683 (-)
XLOC_036809 rbsn coding downstream 15634 53150972 ~ 53169445 (-)
XLOC_036808 b3galt4 coding downstream 76872 53107380 ~ 53108207 (-)
XLOC_036806 nr6a1a coding downstream 140779 52888295 ~ 53044300 (-)
XLOC_036807 NA coding downstream 249609 52933059 ~ 52935470 (-)
XLOC_036812 CU914536.1 coding upstream 158625 53356779 ~ 53356896 (-)
XLOC_036813 NA coding upstream 266064 53464218 ~ 53467703 (-)
XLOC_036814 chdh coding upstream 276601 53474755 ~ 53490376 (-)
XLOC_036815 actr8 coding upstream 319844 53517998 ~ 53535303 (-)
XLOC_036816 selenok coding upstream 338949 53537103 ~ 53542424 (-)
XLOC_036805 NA non-coding downstream 302303 52877822 ~ 52882776 (-)
XLOC_036801 NA non-coding downstream 553595 52627507 ~ 52631484 (-)
XLOC_036797 NA non-coding downstream 779933 52401657 ~ 52405146 (-)
XLOC_036796 NA non-coding downstream 874452 52297701 ~ 52310627 (-)
XLOC_036822 NA non-coding upstream 583327 53781481 ~ 53781852 (-)
XLOC_036824 CABZ01090219.1 non-coding upstream 643148 53841302 ~ 53851585 (-)
XLOC_036829 NA non-coding upstream 863543 54061697 ~ 54068296 (-)

Expression


Co-expression Network