RNA id: TCONS_00071863


Basic Information

Item Value
RNA id TCONS_00071863
length 1302
RNA type mRNA
GC content 0.52
exon number 10
gene id XLOC_036811
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53185079 ~ 53198154 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGGAGGCTGATTTGCTTGTGTTTCTCCACAGGGCCATGCTGAGTGATATCGGGGATTATGTCGGCACAGATATTGAAATATCCTGGCTGCCAAATCTGGATGACCTCATGAAAGGTTACGCTCGAAACTTTCGTCCAGGGATCGGAGGACCGCCTGTGAACGTCGCCATGGCCATTGAAGTGGCCAGTATTGACCACATCTCAGAAGCCAACATGGAATACACCATGACAGTGTTTCTGCGTCAGAGCTGGAGAGACGACCGTCTGTCCTACAACCACACGAACAAAACTCTGGGTCTGGACAGCCGCTTCGTGGACAAACTCTGGCTTCCGGACACCTTCATCGTCAACGCCAAGTCCGCCTGGTTTCATGACGTGACGGTGGAGAATAAACTCATACGCCTGCAGCCTGACGGAGTCATTCTCTACAGCAGTCGAATCACATCTACAGTCGCGTGTGATATGGATCTCACCAAATACCCCATGGATGAGCAGGAATGCATGCTAGACCTTGAAAGCTATGGCTACTCTTCAGAAGACATTGTGTATCACTGGTCAGAAAGTCAGAAGCTCATCCATGGCCTGGACAAACTGGAGCTTTCCCAGTTCACCATCACCGACTATCGCTTTGTGACAGAGATGATGAACTTTAAATCTGCGGGCAGATTTCCACGTCTTAGCCTGCGTTTCCAGCTGAGGAGGAACCGAGGAGTTTACATCATCCAGTCCTACATGCCGTCCATCCTGCTGGTGGCCATGTCCTGGGTTTCATTCTGGATCAGCCAGTCCGCCGTGCCAGCGAGAGTGTCTTTAGGAATCACGACGGTTCTGACCATGACGACGCTGATGGTCAGTGCTCGCTCTTCACTGCCTCGCGCTTCTGCCATTAAAGCTCTGGACGTGTATTTCTGGATCTGCTACGTCTTTGTGTTCGCTGCTTTGATCGAATACGCCTTTGCTCACTATAATGCAGACTACAGCAAGAAGGAGAAAGCCAAAGTCAAGACCAATAAGAATGCAGAGTCGATGGTGAAGAATGGAAAGCAGGCCATGGTTCTGTTTTCTCTGTCGGTGGCGGGCATGAACCAGGGTCTCCTGATCTCCAACAGGCAGAATCCGCATGAAGAGACTGAGACTCGCAGCGCTACGAGCCGAAGAGCGCAGAAAGAAAGCAGCGAGGAGAAGAAATGCTGCAAGTGTAAACCCATAGACGCCGACACCATCGACATCTACGCTCGTGCCGTCTTCCCGTTCACCTTCGCCGTGGTCAACGTCATCTACTGGGTGGCGTACACCATGTAG

Function

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1902711 GABA-A receptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004890 GABA-A receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-081105-170 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in idiopathic generalized epilepsy 10. Orthologous to human GABRD (gamma-aminobutyric acid type A receptor subunit delta).

Ensembl:

ensembl_id ENSDART00000083416

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071861 lncRNA downstream 5441 53175379 ~ 53179639 (-) True XLOC_036810
TCONS_00072563 lncRNA downstream 140939 53014425 ~ 53044141 (-) False XLOC_036806
TCONS_00072567 lncRNA upstream 266064 53464218 ~ 53467703 (-) True XLOC_036813
TCONS_00071870 lncRNA upstream 338949 53537103 ~ 53541456 (-) False XLOC_036816
TCONS_00071872 lncRNA upstream 341417 53539571 ~ 53542414 (-) False XLOC_036816
TCONS_00071873 lncRNA upstream 342912 53541066 ~ 53542419 (-) True XLOC_036816
TCONS_00072568 lncRNA upstream 583327 53781481 ~ 53781852 (-) True XLOC_036822
TCONS_00071860 mRNA downstream 5397 53171002 ~ 53179683 (-) False XLOC_036810
TCONS_00071859 mRNA downstream 15635 53151728 ~ 53169445 (-) True XLOC_036809
TCONS_00071858 mRNA downstream 18105 53150972 ~ 53166975 (-) False XLOC_036809
TCONS_00071857 mRNA downstream 76873 53107380 ~ 53108207 (-) True XLOC_036808
TCONS_00071856 mRNA downstream 140991 53040551 ~ 53044089 (-) False XLOC_036806
TCONS_00071866 mRNA upstream 276601 53474755 ~ 53490376 (-) False XLOC_036814
TCONS_00071867 mRNA upstream 276687 53474841 ~ 53488832 (-) True XLOC_036814
TCONS_00071868 mRNA upstream 319844 53517998 ~ 53535262 (-) False XLOC_036815
TCONS_00071869 mRNA upstream 335345 53533499 ~ 53535303 (-) True XLOC_036815
TCONS_00071871 mRNA upstream 338949 53537103 ~ 53542424 (-) False XLOC_036816
TCONS_00071818 other downstream 1677901 51434496 ~ 51507179 (-) False XLOC_036786
TCONS_00071804 other downstream 2157127 51027839 ~ 51027953 (-) True XLOC_036779
TCONS_00071797 other downstream 2667177 50517782 ~ 50517903 (-) True XLOC_036773
TCONS_00071775 other downstream 3429181 49746232 ~ 49755899 (-) False XLOC_036760
TCONS_00071744 other downstream 4012580 49169768 ~ 49172500 (-) False XLOC_036747
TCONS_00071865 other upstream 158625 53356779 ~ 53356896 (-) True XLOC_036812

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00002239 True 1299 mRNA 0.50 8 CM030136.1 8712465 ~ 8720117 (-)