RNA id: TCONS_00071866


Basic Information

Item Value
RNA id TCONS_00071866
length 2006
RNA type mRNA
GC content 0.58
exon number 9
gene id XLOC_036814
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53474755 ~ 53490376 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTACAGAGGAATCCTTCTTCAACATCTCCATAGGTCAGCTGTGCGGACACTACAGCACTGCACGGCTGCAGATGAGTATCAGTGCATTGCTCTGAAAGCTGACCGCTCTGACATCTCTATCATctccatcatcttcatcatctccaTACTCTCCATCAGTATGGCGTGTTTCTCCTCCTCGACGAGGCTCATGTCCAGCCTCTGCAGTCCACTGCTCCATCACAGGTACATCAGTACCGTGGTAAACAAGAATACACCGTCCTACAGCTATGTGATAGTCGGGGCCGGTTCTGCGGGCTGCGTTCTGGCCAGCCGGCTGACGGAGAACCCATCCGATTCTGTGCTGCTTCTGGAAGCGGGACCCAAAGACAAGCACCTGGGCAGCACACGTCTGTCCTGGAAGATCCACATGCCGGCCGCGCTCACATACAACCTCTGCGACGACAGGTACAACTGGTTCTACCACACGTTACCTCAGGCCCACATGGATGACCGTGTGATGTACTGGCCCCGCGGGCGTGTCTGGGGCGGCTCATCCTCACTTAACGCCATGGTGTACATCCGGGGACACGCAGAGGACTACAACCGCTGGCAGAGTGAGGGTGCGGACGGCTGGAACTACGACCACTGCCTGCCGTACTTCCGTAAAGCACAGACACACGAGCTCGGACCTGACCGGTACCGCGGAGGAGACGGACCACTGCACGTGAGCCGAGGGAAAACACAAAACCCTCTGCACTATGCATTCATCCAGGCGGGACAGCAGGCTGGATACCCCTACACCGAGGACATGAACGGGTTCCAGCAGGAGGGGGTCGGCTGGATGGACATGACCATTCATAAAGGTCAGCGGTGGAGCACAGCGAGTGCGTACCTGCGGCCGGCGCTGTCCAGACCCAACCTGAGCACAGAGGTACGCTGTATGGTGACGCGCGTGCTGTTCGACGGAGCCCGCGCTCGAGGAGTCGAGTACCAGCAGAACGGACAGATCAAAAAGGTGTTTGCAGAGAAGGAGGTGATTCTGAGCGGCGGCGCCATCAACTCTCCACAGCTCCTCCTGCTGTCTGGAGTGGGAAACGCAGATGAGCTGAAAACCCTGGACATTCCTGTGGTCCAGCATCTGCCCGgtgtggGCTGTAATCTGCAGGATCATCTAGAGCTGTATGTTCAGCATGCCTGTACTCAGCCCATCACTCTCTACAGAGCCCAGAAACCCTTACAGATGCTCAAGATCGGCCTCGAGTGGCTGCTCAAGTTCACAGGTTACGGAGCGACGGCTCATCTGGAGAGCGGAGGCTTCATCCGCAGCCGGCCCGATGTTCCTCATCCCGATATTCAGTTCCACTTCCTGCCCTCGCAGGTCATCGATCACGGACGCGTCAGCTCCAAGATCGAAGCCTTCCAGGTTCATGTCGGGCCCATGAGGAGCACCAGTGTCGGCTGGCTCAAACTCAAGAGTAAAGACCCCAGAGATCACCCCATCCTGCAGCCAAACTACCTGTCCACAGAGACGGATGTGCTGGAGTTCAGAGAGTGTGTGAGGCTCACGCGGGAGATCTTCGCTCAGCAAGCGTTTGATGAGTTCCGGGGCCCCGAGGTCCAGCCGGGCCCTGCAGTGCAGTCAGACGCGGAGATCGACGCTTTCGTACGGCAGAAGGCAGACAGCGCCTATCACCCGTCCTGCACCTGTAAGATGGGCCGGCCGGAGGACAGGATGGCAGTGGTCAGTCCTGAGCTGCGGGTGTTTGGTGTGGAGGGGCTACGGGTGGTGGACGCCTCCGTCATGCCCAGTATGGTCAGCGGGAACCTGAACGCTCCCACTATCATGATCGCAGAGAAAGCGGCGGACGCCATTAAAGGCCTTCCCTCACTGCACGACCCTGGAGTTCCTGTTTACCAGCCCAGAAAACACCCTTAACCTGATCCGCCATGGTAAAACCGTCTCCTAACTGcaagtgttgtcaaaagtatggAGTTCAGTACCAATCGACACTGAAATTTGAC

Function

GO:

id name namespace
GO:0019285 glycine betaine biosynthetic process from choline biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0008812 choline dehydrogenase activity molecular_function
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors molecular_function

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

ZFIN:

id description
ZDB-GENE-120111-1 Predicted to enable choline dehydrogenase activity. Predicted to act upstream of or within glycine betaine biosynthetic process from choline. Predicted to be active in mitochondrial inner membrane. Orthologous to human CHDH (choline dehydrogenase).

Ensembl:

ensembl_id ENSDART00000158789

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072567 lncRNA downstream 7052 53464218 ~ 53467703 (-) True XLOC_036813
TCONS_00071864 lncRNA downstream 283995 53189289 ~ 53190760 (-) True XLOC_036811
TCONS_00071861 lncRNA downstream 295116 53175379 ~ 53179639 (-) True XLOC_036810
TCONS_00072563 lncRNA downstream 430614 53014425 ~ 53044141 (-) False XLOC_036806
TCONS_00071870 lncRNA upstream 46727 53537103 ~ 53541456 (-) False XLOC_036816
TCONS_00071872 lncRNA upstream 49195 53539571 ~ 53542414 (-) False XLOC_036816
TCONS_00071873 lncRNA upstream 50690 53541066 ~ 53542419 (-) True XLOC_036816
TCONS_00072568 lncRNA upstream 291105 53781481 ~ 53781852 (-) True XLOC_036822
TCONS_00071881 lncRNA upstream 350926 53841302 ~ 53851585 (-) True XLOC_036824
TCONS_00071863 mRNA downstream 276601 53185080 ~ 53198154 (-) False XLOC_036811
TCONS_00071862 mRNA downstream 279255 53185079 ~ 53195500 (-) False XLOC_036811
TCONS_00071860 mRNA downstream 295072 53171002 ~ 53179683 (-) False XLOC_036810
TCONS_00071859 mRNA downstream 305310 53151728 ~ 53169445 (-) True XLOC_036809
TCONS_00071858 mRNA downstream 307780 53150972 ~ 53166975 (-) False XLOC_036809
TCONS_00071868 mRNA upstream 27622 53517998 ~ 53535262 (-) False XLOC_036815
TCONS_00071869 mRNA upstream 43123 53533499 ~ 53535303 (-) True XLOC_036815
TCONS_00071871 mRNA upstream 46727 53537103 ~ 53542424 (-) False XLOC_036816
TCONS_00071874 mRNA upstream 53718 53544094 ~ 53548145 (-) True XLOC_036817
TCONS_00071875 mRNA upstream 149249 53639625 ~ 53649294 (-) True XLOC_036818
TCONS_00071865 other downstream 117859 53356779 ~ 53356896 (-) True XLOC_036812
TCONS_00071818 other downstream 1967576 51434496 ~ 51507179 (-) False XLOC_036786
TCONS_00071804 other downstream 2446802 51027839 ~ 51027953 (-) True XLOC_036779
TCONS_00071797 other downstream 2956852 50517782 ~ 50517903 (-) True XLOC_036773
TCONS_00071775 other downstream 3718856 49746232 ~ 49755899 (-) False XLOC_036760

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000050_01346318_01366815.mRNA True 2783 mRNA 0.49 7 CI01000050 1346195 ~ 1367657 (+)