RNA id: TCONS_00071861


Basic Information

Item Value
RNA id TCONS_00071861
length 419
lncRNA type sense_over
GC content 0.44
exon number 3
gene id XLOC_036810
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53171002 ~ 53179683 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAGCACGTCTGCATTTCAGAAGCACAACACAAACACTCTGAAGGGGAATTAGGATTAAGAAAAGTCTCCTTCATCATGACGGATCACGAATTCCCTGACGTGGCTTCAATGAAGCCATGCATTCGTCCGGACATGTTTGATTTCGAGGGAGTGTTTTTGACTCGCTTCTTCACTGACAACTGGGAGAACGTGAAAAACTTTCAAGCCAGACCTGACGACATTCTCATAGCCACGTATCCTAAAGCAGGAACTACATGGGTTTCTTATATCCTCGACCTTCTGTATTTCGGTAATGATGAGAATCAGACCTCGCAGCCCATCGTTCAGAGAGTGCCGTTCCTGGAGTCCTGCTTTCAGGAGTTTTCAACGAGTCAGTCAATCTTTTTACCGCTACACTATTAATGAACTTAttttatc

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0008146 sulfotransferase activity molecular_function
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072563 lncRNA downstream 131238 53014425 ~ 53044141 (-) False XLOC_036806
TCONS_00072564 lncRNA downstream 131238 53021315 ~ 53044141 (-) False XLOC_036806
TCONS_00072565 lncRNA downstream 131238 53036945 ~ 53044141 (-) False XLOC_036806
TCONS_00072566 lncRNA downstream 131276 53041217 ~ 53044103 (-) True XLOC_036806
TCONS_00072562 lncRNA downstream 239909 52933059 ~ 52935470 (-) True XLOC_036807
TCONS_00071864 lncRNA upstream 9650 53189289 ~ 53190760 (-) True XLOC_036811
TCONS_00072567 lncRNA upstream 284579 53464218 ~ 53467703 (-) True XLOC_036813
TCONS_00071870 lncRNA upstream 357464 53537103 ~ 53541456 (-) False XLOC_036816
TCONS_00071872 lncRNA upstream 359932 53539571 ~ 53542414 (-) False XLOC_036816
TCONS_00071873 lncRNA upstream 361427 53541066 ~ 53542419 (-) True XLOC_036816
TCONS_00071859 mRNA downstream 5934 53151728 ~ 53169445 (-) True XLOC_036809
TCONS_00071858 mRNA downstream 8404 53150972 ~ 53166975 (-) False XLOC_036809
TCONS_00071857 mRNA downstream 67172 53107380 ~ 53108207 (-) True XLOC_036808
TCONS_00071855 mRNA downstream 131079 52888428 ~ 53044300 (-) False XLOC_036806
TCONS_00071856 mRNA downstream 131290 53040551 ~ 53044089 (-) False XLOC_036806
TCONS_00071862 mRNA upstream 5440 53185079 ~ 53195500 (-) False XLOC_036811
TCONS_00071863 mRNA upstream 5441 53185080 ~ 53198154 (-) False XLOC_036811
TCONS_00071866 mRNA upstream 295116 53474755 ~ 53490376 (-) False XLOC_036814
TCONS_00071867 mRNA upstream 295202 53474841 ~ 53488832 (-) True XLOC_036814
TCONS_00071868 mRNA upstream 338359 53517998 ~ 53535262 (-) False XLOC_036815
TCONS_00071818 other downstream 1668200 51434496 ~ 51507179 (-) False XLOC_036786
TCONS_00071804 other downstream 2147426 51027839 ~ 51027953 (-) True XLOC_036779
TCONS_00071797 other downstream 2657476 50517782 ~ 50517903 (-) True XLOC_036773
TCONS_00071775 other downstream 3419480 49746232 ~ 49755899 (-) False XLOC_036760
TCONS_00071744 other downstream 4002879 49169768 ~ 49172500 (-) False XLOC_036747
TCONS_00071865 other upstream 177140 53356779 ~ 53356896 (-) True XLOC_036812

Expression Profile

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