RNA id: TCONS_00072565


Basic Information

Item Value
RNA id TCONS_00072565
length 566
lncRNA type sense_over
GC content 0.48
exon number 3
gene id XLOC_036806
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 52888295 ~ 53044300 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGATGATTGGCTGCAGAGCTCTGATAACCACGCCCACACGCCCGCACGGCATGCTCTCAGGCTGGAGGTAACGGCAGGAATGATGGAAGTTTGATCCTGTCACTGCAAACATGTTTATTTTCTCCGTGTTATGAGCCACAACAACGGAAAGAGGACAACTTTAATGAAAACAAACCAGAGATATGGTGGACAAAACACACGAGACTGAGTTTTCGAAGAAACAACTTGAAGCATCATCCAGCGGTCATGGTGGTGTTCTGATAGATGCAGAGGAGAATGGGATACgtgGCAGCTGTATGAGGAAAGGTCATTTTGAGTTCATCCACTGCTGACCTCAGAGTGACCTCCGCATGTAAACCTCTGGGAAAGAGGCATGAGGGACCTGTAGGAGAAGCCCTCAGAGAAAGGCGGTATTGTTGCTGTGGGTCGCTGAGTTATGAGCTACAGCTGTAAATGTGAGCACCGTCTGATACATTTCCGCCTCAAACTGTGACGGATACTGGATTTGATCCATCAGGAGTTGATTGAATGCTGAAAAACACTGAACAAAGTAATAAAGGTGGC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016477 cell migration biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0022008 neurogenesis biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072562 lncRNA downstream 101475 52933059 ~ 52935470 (-) True XLOC_036807
TCONS_00072560 lncRNA downstream 154169 52879520 ~ 52882776 (-) False XLOC_036805
TCONS_00072092 lncRNA downstream 154186 52879636 ~ 52882759 (-) False XLOC_036805
TCONS_00072091 lncRNA downstream 154199 52877822 ~ 52882746 (-) False XLOC_036805
TCONS_00071861 lncRNA upstream 131238 53175379 ~ 53179639 (-) True XLOC_036810
TCONS_00071864 lncRNA upstream 145148 53189289 ~ 53190760 (-) True XLOC_036811
TCONS_00072567 lncRNA upstream 420077 53464218 ~ 53467703 (-) True XLOC_036813
TCONS_00071870 lncRNA upstream 492962 53537103 ~ 53541456 (-) False XLOC_036816
TCONS_00071872 lncRNA upstream 495430 53539571 ~ 53542414 (-) False XLOC_036816
TCONS_00071854 mRNA downstream 98506 52888408 ~ 52938439 (-) False XLOC_036806
TCONS_00071853 mRNA downstream 127095 52888295 ~ 52909850 (-) False XLOC_036806
TCONS_00071851 mRNA downstream 165889 52838017 ~ 52871056 (-) False XLOC_036804
TCONS_00071852 mRNA downstream 175675 52851045 ~ 52861270 (-) True XLOC_036804
TCONS_00071850 mRNA downstream 177644 52833443 ~ 52859301 (-) False XLOC_036804
TCONS_00071857 mRNA upstream 63239 53107380 ~ 53108207 (-) True XLOC_036808
TCONS_00071858 mRNA upstream 106831 53150972 ~ 53166975 (-) False XLOC_036809
TCONS_00071859 mRNA upstream 107587 53151728 ~ 53169445 (-) True XLOC_036809
TCONS_00071860 mRNA upstream 126861 53171002 ~ 53179683 (-) False XLOC_036810
TCONS_00071862 mRNA upstream 140938 53185079 ~ 53195500 (-) False XLOC_036811
TCONS_00071818 other downstream 1529766 51434496 ~ 51507179 (-) False XLOC_036786
TCONS_00071804 other downstream 2008992 51027839 ~ 51027953 (-) True XLOC_036779
TCONS_00071797 other downstream 2519042 50517782 ~ 50517903 (-) True XLOC_036773
TCONS_00071775 other downstream 3281046 49746232 ~ 49755899 (-) False XLOC_036760
TCONS_00071744 other downstream 3864445 49169768 ~ 49172500 (-) False XLOC_036747
TCONS_00071865 other upstream 312638 53356779 ~ 53356896 (-) True XLOC_036812

Expression Profile

//