XLOC_036804 (nr5a1a)


Basic Information

Item Value
gene id XLOC_036804
gene name nr5a1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 52833443 ~ 52871056 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071850
TTTCAGTCCAGACATACATGACACACGGATGCATCGAGAACTCAACATCTCTAGCCTTATTATTTTAATACGCATCATTTTAGTGTGACACTTTAATATTGAGacGGTGATGGACTTCAGAGCAGATGAGGATTTGGAGGAGCTTTGCCCGGTGTGCGGAGATAAAGTGTCCGGTTATCATTACGGCCTTCTGACCTGCGAAAGTTGTAAGGGTTTTTTCAAGAGGACAGTTCAGAATAACAAGAGATACACGTGCACACAGAACCAGGACTGCGGCATCGACAAAACTCAGAGGAAAAGATGTCCGTTCTGCCGCTTCCAGAAGTGTCTGAGTGTCGGCATGAGACTTGAGGCTGTGCGTGCAGACCGGATGAGAGGTGGAAGAAATAAGTTTGGCCCAATGTACAAGCGAGACCGAGCCTTAAAGCAGCAGAAGCGAGCTTTAATCCGAGCTAGCGGCTTCAAACTGGAGGCTAACGGGACGCTGCTGTCGGGACAGACAGAGTTCAGTTCTGTAGGTCTGCAGTCTCCCTATGACTGTCCTCCGCCTGCTCTCGGAGTCGCTCTGCAGAATTACGGCTCATTCCCAGCACAGTATCAGTACACGGCTCCGTCTCTACCCAAATCCATCAAAGCCGAGTATCCGGACGCGTACTCCAGCTCTCCGGACTCCACGCTGGGTTACTCATACGCTGATGGATGCCTGAGCGCTTCACCACACAGTGTCCCCATAAACCCTGCGCTGCCGCCGCTGGTGCTGGAGCTGCAGAGCTGCGACCCAGATGAGGAGCAGgTGAGAGGAAAGATCTGCGCGTATCTCCACCAGGAGCAGAGTGGCAGAGGAAAGCTGGAGAAATCGCGACCCTTCAGCCTGCTGTGTGTCATGGCCGACCAGACGCTCTTCTCTATCGTGGAGTGGGCGAGAAGCTGTGTCTTCTTCAAGGAACTAAAGGTGGGCGATCAGATGCGTCTGCTGCATAACTGCTGGAGCGAGCTGCTGCTTCTGGATCACATCTGCAGACAGGTGCATCATGGGAGAGACGGCAGCCTGCTGCTCATCACAGGACAGGAGgtgGAGCTGTCGGCGGTGTTGGACGCTGGTCCTCCTCTGTCCAGCATGGTTGAGCGAGGGCAGGatctgtcccgccggctccagctgCTGCAGGTGGACAGCAGAGAGATGGCCTGTCTGAAGTTCCTCATCCTCTTCAACCCCAACGTGAAGCTCCTGGAGAACCCGCAGTTTGTGGAGAGCGTGCAGGAGCAGGTGAACGGGGCTCTGCTGGAGTACACACTCTTCTCGTACCCGCAGTGTGTGGAGCGCTTCAGTCAGCTGATCCTGCGGCTGCCCGAGCTGCGTTCGCTGAGCGCCGAGGCCGAAGACTTCCTCTGCTACAAACACCTGTGTGGAGAAGTGCCCTGCAACAACCTGCTGATCGAGATGCTGCACGCCAAGAGGTCCAGCgcacagtgaacacacacacacacacgcacgtacaTGCTTTTCACACACTGCCGTCTGGTTTGTAGTAAGATAGAgattctgaaatcaagaagcattttccagagCAGTTCCCAAACTTTTCCCAAAATAACGAGTAgggtgaagctgcaggcccggagacccaactgcacgctcagacctgcgCGCACACACCGATTgttttctcagacagtgccacctgctgttggaAGTCAATGTAGCAATAAACACCCATAACATCACCAGAGGGGAGTCAACAGGACCAaaggtccgttcttcgtacctcgcttaaatgatcgaagatgatttggcagatcctggatctgttaatcttgataactgatctctcgctaatttggttcttcaaacaagttcgcgaatcagattagaatgtctggaactgatctgagatcgctgcgtgtgttgtgaaggacagatctatccatcctcgaaatcatgatcagcaatgcaacgattggctgacggcacagcagcgtaatgacatcatctgattaatattcaattatccatgtgagcaaaattcgCAGtcaacggtttgttaaatatgatacgcaataactttacaccttgttgtgggctgtATGCTTGgctctttcatttgtcaagagcaatttatttaggtttaggtttaactttatttgtccccgagaggaaatttgtcttgggcataaaaggtgctacaacattgtctaaacagacagtaaaaataaataaaacaaaacaattaagaacaaacagttaagaacatacatatttagttttacagttagcggattttccttattatagtagtattattgtagccggttttttaatcggtgtaaagaataactattttttacaaaagcattttgatattggtaaaggcgtctgcaacttttatgaagcatcaaatcaccgtcatatattaactgccaaaacatgtttatgactgcataaatgtattattgcttttaaaaagtcacatattgtgcacgtctattatcatacacaaattgtactaaagcgatctaaacaGTTCATACCa
>TCONS_00071851
tgtgtgtatctgtgtaaaatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggtctgCTGGTGGGATCTGTGGTTTCACACACAGCTGCTCCTCCAGCGCTCCTGATCTGTCATAACACAAATATTAAAGAGCACAACACACTTTGATCTGAGCGTCTGCAGGGTTCCAGAGacGGTGATGGACTTCAGAGCAGATGAGGATTTGGAGGAGCTTTGCCCGGTGTGCGGAGATAAAGTGTCCGGTTATCATTACGGCCTTCTGACCTGCGAAAGTTGTAAGGGTTTTTTCAAGAGGACAGTTCAGAATAACAAGAGATACACGTGCACACAGAACCAGGACTGCGGCATCGACAAAACTCAGAGGAAAAGATGTCCGTTCTGCCGCTTCCAGAAGTGTCTGAGTGTCGGCATGAGACTTGAGGCTGTGCGTGCAGACCGGATGAGAGGTGGAAGAAATAAGTTTGGCCCAATGTACAAGCGAGACCGAGCCTTAAAGCAGCAGAAGCGAGCTTTAATCCGAGCTAGCGGCTTCAAACTGGAGGCTAACGGGACGCTGCTGTCGGGACAGACAGAGTTCAGTTCTGTAGGTCTGCAGTCTCCCTATGACTGTCCTCCGCCTGCTCTCGGAGTCGCTCTGCAGAATTACGGCTCATTCCCAGCACAGTATCAGTACACGGCTCCGTCTCTACCCAAATCCATCAAAGCCGAGTATCCGGACGCGTACTCCAGCTCTCCGGACTCCACGCTGGGTTACTCATACGCTGATGGATGCCTGAGCGCTTCACCACACAGTGTCCCCATAAACCCTGCGCTGCCGCCGCTGGTGCTGGAGCTGCAGAGCTGCGACCCAGATGAGGAGCAGgTGAGAGGAAAGATCTGCGCGTATCTCCACCAGGAGCAGAGTGGCAGAGGAAAGCTGGAGAAATCGCGACCCTTCAGCCTGCTGTGTGTCATGGCCGACCAGACGCTCTTCTCTATCGTGGAGTGGGCGAGAAGCTGTGTCTTCTTCAAGGAACTAAAGGTGGGCGATCAGATGCGTCTGCTGCATAACTGCTGGAGCGAGCTGCTGCTTCTGGATCACATCTGCAGACAGGTGCATCATGGGAGAGACGGCAGCCTGCTGCTCATCACAGGACAGGAGgtgGAGCTGTCGGCGGTGTTGGACGCTGGTCCTCCTCTGTCCAGCATGGTTGAGCGAGGGCAGGatctgtcccgccggctccagctgCTGCAGGTGGACAGCAGAGAGATGGCCTGTCTGAAGTTCCTCATCCTCTTCAACCCCA
>TCONS_00071852
GAACGACTAAACGGATCCATCGCTGTTTCTTCTTTACCGGACACCGGAGCTGAGGGACGAGCACGCGCATGCTGGACGCGCATTTTAACGacGGTGATGGACTTCAGAGCAGATGAGGATTTGGAGGAGCTTTGCCCGGTGTGCGGAGATAAAGTGTCCGGTTATCATTACGGCCTTCTGACCTGCGAAAGTTGTAAGGGTTTTTTCAAGAGGACAGTTCAGAATAACAAGAGATACACGTGCACACAGAACCAGGACTGCGGCATCGACAAAACTCAGAGGAAAAGATGTCCGTTCTGCCGCTTCCAGAAGTGTCTGAGTGTCGGCATGAGACTTGAGGCTGTGCGTGCAGACCGGATGAGAGGTGGAAGAAATAAGTTTGGCCCAATGTACAAGCGAGACCGAGCCTTAAAGCAGCAGAAGCGAGCTTTAATCCGAGCTAGCGGCTTCAAACTGGAGGCTAACGGGACGCTGCTGTCGGGACAGACAGAGTTCAGTTCTGTAG

Function

symbol description
nr5a1a Enables DNA binding activity and DNA-binding transcription factor activity. Acts upstream of or within several processes, including endocrine system development; hypothalamus development; and transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in endocrine system; forebrain; gonad primordium; and interrenal primordium. Human ortholog(s) of this gene implicated in 46,XX sex reversal 4; 46,XY sex reversal 3; Zellweger syndrome; primary ovarian insufficiency 7; and spermatogenic failure 8. Orthologous to human NR5A1 (nuclear receptor subfamily 5 group A member 1).

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021854 hypothalamus development biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0009888 tissue development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0030325 adrenal gland development biological_process
GO:0009755 hormone-mediated signaling pathway biological_process
GO:0090575 RNA polymerase II transcription regulator complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010504-1 Enables DNA binding activity and DNA-binding transcription factor activity. Acts upstream of or within several processes, including endocrine system development; hypothalamus development; and transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Is expressed in endocrine system; forebrain; gonad primordium; and interrenal primordium. Human ortholog(s) of this gene implicated in 46,XX sex reversal 4; 46,XY sex reversal 3; Zellweger syndrome; primary ovarian insufficiency 7; and spermatogenic failure 8. Orthologous to human NR5A1 (nuclear receptor subfamily 5 group A member 1).

Ensembl:

ensembl_id ENSDARG00000103176

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071850 False 2531 mRNA 0.48 8 52833443 52859301
TCONS_00071851 False 1345 mRNA 0.55 7 52838017 52871056
TCONS_00071852 True 505 mRNA 0.52 4 52851045 52861270

Neighbor

gene id symbol gene type direction distance location
XLOC_036803 fgf17 coding downstream 88275 52732107 ~ 52745168 (-)
XLOC_036802 tubb2b coding downstream 117532 52713232 ~ 52715911 (-)
XLOC_036801 NA coding downstream 201959 52627507 ~ 52631484 (-)
XLOC_036800 si:ch73-199g24.2 coding downstream 239332 52550241 ~ 52594111 (-)
XLOC_036799 phyhip coding downstream 360389 52453146 ~ 52473054 (-)
XLOC_036805 NA coding upstream 6766 52877822 ~ 52882776 (-)
XLOC_036806 nr6a1a coding upstream 17239 52888295 ~ 53044300 (-)
XLOC_036807 NA coding upstream 62003 52933059 ~ 52935470 (-)
XLOC_036808 b3galt4 coding upstream 236324 53107380 ~ 53108207 (-)
XLOC_036809 rbsn coding upstream 279916 53150972 ~ 53169445 (-)
XLOC_036797 NA non-coding downstream 428297 52401657 ~ 52405146 (-)
XLOC_036796 NA non-coding downstream 522816 52297701 ~ 52310627 (-)
XLOC_036793 NA non-coding downstream 845096 51986810 ~ 51988347 (-)
XLOC_036781 NA non-coding downstream 1620775 51212413 ~ 51212668 (-)
XLOC_036812 CU914536.1 non-coding upstream 485723 53356779 ~ 53356896 (-)
XLOC_036813 NA non-coding upstream 593162 53464218 ~ 53467703 (-)
XLOC_036822 NA non-coding upstream 910425 53781481 ~ 53781852 (-)

Expression


Co-expression Network