Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_036803 |
| gene name | fgf17 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007119.7 |
| NCBI id | CM002892.2 |
| chromosome length | 54304671 |
| location | 52732107 ~ 52745168 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| fgf17 | Predicted to enable growth factor activity; type 1 fibroblast growth factor receptor binding activity; and type 2 fibroblast growth factor receptor binding activity. Involved in mesoderm development and nervous system development. Acts upstream of or within anterior/posterior pattern specification and negative regulation of endodermal cell fate specification. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Is expressed in several structures, including blastomere; cardiovascular system; forebrain; paraxial mesoderm; and sensory system. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 20 with or without anosmia. Orthologous to human FGF17 (fibroblast growth factor 17). |
| id | name | namespace |
|---|---|---|
| GO:0010628 | positive regulation of gene expression | biological_process |
| GO:0007498 | mesoderm development | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0009887 | animal organ morphogenesis | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0051781 | positive regulation of cell division | biological_process |
| GO:0008543 | fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0008284 | positive regulation of cell population proliferation | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0001934 | positive regulation of protein phosphorylation | biological_process |
| GO:0030334 | regulation of cell migration | biological_process |
| GO:0042664 | negative regulation of endodermal cell fate specification | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005104 | fibroblast growth factor receptor binding | molecular_function |
| GO:0005105 | type 1 fibroblast growth factor receptor binding | molecular_function |
| GO:0005111 | type 2 fibroblast growth factor receptor binding | molecular_function |
| GO:0008083 | growth factor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040621-1 | Predicted to enable growth factor activity; type 1 fibroblast growth factor receptor binding activity; and type 2 fibroblast growth factor receptor binding activity. Involved in mesoderm development and nervous system development. Acts upstream of or within anterior/posterior pattern specification and negative regulation of endodermal cell fate specification. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Is expressed in several structures, including blastomere; cardiovascular system; forebrain; paraxial mesoderm; and sensory system. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 20 with or without anosmia. Orthologous to human FGF17 (fibroblast growth factor 17). |
| ensembl_id | ENSDARG00000102778 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00071848 | False | 2011 | mRNA | 0.45 | 5 | 52732107 | 52745168 |
| TCONS_00071849 | True | 629 | mRNA | 0.53 | 5 | 52733429 | 52745141 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_036802 | tubb2b | coding | downstream | 16196 | 52713232 ~ 52715911 (-) |
| XLOC_036801 | NA | coding | downstream | 100623 | 52627507 ~ 52631484 (-) |
| XLOC_036800 | si:ch73-199g24.2 | coding | downstream | 137996 | 52550241 ~ 52594111 (-) |
| XLOC_036799 | phyhip | coding | downstream | 259053 | 52453146 ~ 52473054 (-) |
| XLOC_036798 | COX5B | coding | downstream | 319075 | 52408583 ~ 52413032 (-) |
| XLOC_036804 | nr5a1a | coding | upstream | 88275 | 52833443 ~ 52871056 (-) |
| XLOC_036805 | NA | coding | upstream | 132654 | 52877822 ~ 52882776 (-) |
| XLOC_036806 | nr6a1a | coding | upstream | 143127 | 52888295 ~ 53044300 (-) |
| XLOC_036807 | NA | coding | upstream | 187891 | 52933059 ~ 52935470 (-) |
| XLOC_036808 | b3galt4 | coding | upstream | 362212 | 53107380 ~ 53108207 (-) |
| XLOC_036797 | NA | non-coding | downstream | 326961 | 52401657 ~ 52405146 (-) |
| XLOC_036796 | NA | non-coding | downstream | 421480 | 52297701 ~ 52310627 (-) |
| XLOC_036793 | NA | non-coding | downstream | 743760 | 51986810 ~ 51988347 (-) |
| XLOC_036781 | NA | non-coding | downstream | 1519439 | 51212413 ~ 51212668 (-) |
| XLOC_036812 | CU914536.1 | non-coding | upstream | 611611 | 53356779 ~ 53356896 (-) |
| XLOC_036813 | NA | non-coding | upstream | 719050 | 53464218 ~ 53467703 (-) |
| XLOC_036822 | NA | non-coding | upstream | 1036313 | 53781481 ~ 53781852 (-) |
