XLOC_036802 (tubb2b)


Basic Information

Item Value
gene id XLOC_036802
gene name tubb2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 52713232 ~ 52715911 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071847
TTATATGGGGGAAGTGTCTACTCCCAGCCAGTTGAAGAAAGGAAAAGGTTCGCTGCTTTCTCAAATCCAAATCACTCGAGCTAAAATGAGGGAAATCGTGCATCTTCAAGCTGGACAATGCGGAAACCAGATTGGAGCCAAGTTCTGGGAGGTGATCAGTGACGAGCATGGTATTGATCCCACTGGAACATATCATGGAGACAGCGACCTTCAACTCGACAGAATCAATGTCTATTACAACGAGGCATCAGGAGGTAAATATGTGCCCCGTGCTGTGTTGGTGGATCTGGAGCCTGGTACTATGGACTCTGTGAGGTCCGGACCCTTCGGTCAGGTTTTCAGACCAGATAACTTTGTTTTTGGTCAGAGTGGTGCTGGAAACAACTGGGCTAAAGGCCACTACACAGAGGGAGCAGAGCTGGTGGACTCTGTCCTGGATGTGGTTCGCAAAGAGGCAGAGAGCTGCGATTGCCTGCAGGGCTTCCAGCTCACCCACTCCCTGGGTGGAGGAACGGGCTCTGGTATGGGCACCCTCCTCATTAGCAAGATCCGTGAGGAGTATCCCGACCGCATCATGAACACCTTCAGCGTGGTGCCCTCACCCAAAGTGTCTGACACTGTGGTGGAGCCCTACAACGCCACATTGTCGGTTCACCAGCTGGTTGAAAACACAGACGAGACCTACTGCATTGACAACGAGGCTCTTTATGACATCTGCTTCCGCACACTCAAACTCACCACACCGTCATACGGTGATCTCAACCATCTCGTATCTGCCACCATGAGTGGTGTGACCACCTGCCTCAGGTTCCCCGGCCAGCTCAATGCCGATCTCCGCAAACTGGCCGTCAACATGGTGCCCTTCCCCCGTCTCCACTTCTTCATGCCCGGCTTCGCTCCTCTGACCAGCAGGGGGAGCCAGCAGTACCGCTCTCTAACCGTACCCGAGCTCACACAGCAGATGTTTGATGCTAAAAACATGATGGCTGCGTGCGACCCGCGTCACGGCCGCTACCTCACAGTCGCCGCCATCTTCCGTGGCCGCATGTCTATGAAGGAGGTCGACGAGCAGATGCTCAATGTTCAAAACAAGAACAGCAGCTACTTTGTGGAATGGATCCCAAATAACGTCAAGACCGCCGTTTGCGACATCCCGCCTCGTGGTCTGAAAATGGCCGCCACCTTCATCGGAAACAGCACTGCCATCCAGGAGCTCTTCAAGCGCATCTCCGAGCAGTTCACGGCTATGTTCAGGCGCAAGGCTTTCCTGCATTGGTACACAGGCGAAGGTATGGATGAGATGGAGTTCACCGAGGCAGAGAGCAACATGAACGACCTGGTGTCTGAGTACCAGCAGTACCAGGACGCCACCGCCGAGGAGGAGGGCGAGTTTGAGGAGGAGGGAGAGGAAGAGCTGGCTTAAATCGCATTAATATACGTGTCGTTTTCCAGGCTGTATCATTTTGCTCATGTAAAAGGAAAATAAACCTTCCAAAGTCCTGTTTTTTTGTTCTATTCCTCCTCATGTTTGTACAGATGTCAATAAAAggctttttcttctgttaaaa

Function

symbol description
tubb2b Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 7. Orthologous to human TUBB2B (tubulin beta 2B class IIb).

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-722 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 7. Orthologous to human TUBB2B (tubulin beta 2B class IIb).

Ensembl:

ensembl_id ENSDARG00000098591

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071847 True 1568 mRNA 0.52 4 52713232 52715911

Neighbor

gene id symbol gene type direction distance location
XLOC_036801 NA coding downstream 81748 52627507 ~ 52631484 (-)
XLOC_036800 si:ch73-199g24.2 coding downstream 119121 52550241 ~ 52594111 (-)
XLOC_036799 phyhip coding downstream 240178 52453146 ~ 52473054 (-)
XLOC_036798 COX5B coding downstream 300200 52408583 ~ 52413032 (-)
XLOC_036797 NA coding downstream 308086 52401657 ~ 52405146 (-)
XLOC_036803 fgf17 coding upstream 16196 52732107 ~ 52745168 (-)
XLOC_036804 nr5a1a coding upstream 117532 52833443 ~ 52871056 (-)
XLOC_036805 NA coding upstream 161911 52877822 ~ 52882776 (-)
XLOC_036806 nr6a1a coding upstream 172384 52888295 ~ 53044300 (-)
XLOC_036807 NA coding upstream 217148 52933059 ~ 52935470 (-)
XLOC_036796 NA non-coding downstream 402605 52297701 ~ 52310627 (-)
XLOC_036793 NA non-coding downstream 724885 51986810 ~ 51988347 (-)
XLOC_036781 NA non-coding downstream 1500564 51212413 ~ 51212668 (-)
XLOC_036812 CU914536.1 non-coding upstream 640868 53356779 ~ 53356896 (-)
XLOC_036813 NA non-coding upstream 748307 53464218 ~ 53467703 (-)
XLOC_036822 NA non-coding upstream 1065570 53781481 ~ 53781852 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_02328316_02331115 TUBB4A.S, MGC53997, TUBB4B, TUBB4A, TUBB4B.L, TBB2C, TUBB2B coding CI01000050 null 2328226 ~ 2331515 (+)
bowfin (Amia calva) AMCG00020718 tubb3,LOC108431516,LOC107552791,LOC108272015 coding CM030127.1 CM030127.1 31564833 ~ 31573696 (-)