RNA id: TCONS_00071870


Basic Information

Item Value
RNA id TCONS_00071870
length 703
lncRNA type retained_intron
GC content 0.50
exon number 4
gene id XLOC_036816
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53537103 ~ 53542424 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cCGTTGTTGTGTGTTCAGGTCAGGTTCTGGACAGCAGGAGCCGTTCGCCCTGGAGTCTGTCCTTCCTGACCGACTTCTTCTGGGGTGCAGTCGAGTTCATCGGCCTGTTCTTCCAGACTCTGGTCCAGCCGGATCTGTCTAAAGATGGAAACAACAGCGCATCGTCTCGCTTCAGTGACGGCAGAGGTCCTCCTGGGTTCCCAGGCCGCCGACGGATGGGTAGAATAAACCACGGTGCAGGTCCCACACCTCCACCCATGGGCGGAGGAGGATGAGGAAGGTAAACGCCTGCACGCTGATGCAGGCGCTGAGGACAGAGAGACGCTGCTGAGAGTCTGTGATGAACATTAATGCAGACGCTCTACAGATCTCCACCGTCCTCTCCAtcggctgctgctgctgctttaccGCACACTCATGACGTTACTCTGGGAATTCCTGCACCGAGGGGCCAGAGTCACTGATCAtggcagccacacacacacacacacacacatacatacatacatacacatacatactcacacacactcacatacatacacatacatacatacacatatgctTACATACTCACACACTTGTTTCATAACTCTTCTtggtttttattcagtaatgtcTTATATTAAAAGGAGCTGTTGTGATGGATATTCTATGTGCAATTGGCATCAATAAAGTAAGTTATGTTGAATTCTGTCCACAA

Function

GO:

id name namespace
GO:0006335 DNA replication-dependent nucleosome assembly biological_process
GO:0034723 DNA replication-dependent nucleosome organization biological_process
GO:0032469 endoplasmic reticulum calcium ion homeostasis biological_process
GO:0006811 ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0018345 protein palmitoylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-131 Predicted to be involved in calcium ion transport; endoplasmic reticulum calcium ion homeostasis; and protein palmitoylation. Predicted to act upstream of or within ion transport. Predicted to be located in endoplasmic reticulum. Predicted to be active in Golgi apparatus and endoplasmic reticulum membrane. Orthologous to human SELENOK (selenoprotein K).

Ensembl:

ensembl_id ENSDART00000163818

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072567 lncRNA downstream 69400 53464218 ~ 53467703 (-) True XLOC_036813
TCONS_00071864 lncRNA downstream 346343 53189289 ~ 53190760 (-) True XLOC_036811
TCONS_00071861 lncRNA downstream 357464 53175379 ~ 53179639 (-) True XLOC_036810
TCONS_00072564 lncRNA downstream 492962 53021315 ~ 53044141 (-) False XLOC_036806
TCONS_00072568 lncRNA upstream 240025 53781481 ~ 53781852 (-) True XLOC_036822
TCONS_00071881 lncRNA upstream 299846 53841302 ~ 53851585 (-) True XLOC_036824
TCONS_00072569 lncRNA upstream 520241 54061697 ~ 54068296 (-) True XLOC_036829
TCONS_00072570 lncRNA upstream 528705 54070161 ~ 54075099 (-) True XLOC_036830
TCONS_00072093 lncRNA upstream 570573 54112029 ~ 54113768 (-) True XLOC_036832
TCONS_00071869 mRNA downstream 1800 53533499 ~ 53535303 (-) True XLOC_036815
TCONS_00071868 mRNA downstream 1841 53517998 ~ 53535262 (-) False XLOC_036815
TCONS_00071866 mRNA downstream 46727 53474755 ~ 53490376 (-) False XLOC_036814
TCONS_00071867 mRNA downstream 48271 53474841 ~ 53488832 (-) True XLOC_036814
TCONS_00071863 mRNA downstream 338949 53185080 ~ 53198154 (-) False XLOC_036811
TCONS_00071874 mRNA upstream 2638 53544094 ~ 53548145 (-) True XLOC_036817
TCONS_00071875 mRNA upstream 98169 53639625 ~ 53649294 (-) True XLOC_036818
TCONS_00071876 mRNA upstream 128939 53670395 ~ 53680653 (-) True XLOC_036819
TCONS_00071877 mRNA upstream 188912 53730368 ~ 53733659 (-) False XLOC_036820
TCONS_00071878 mRNA upstream 188932 53730388 ~ 53735399 (-) True XLOC_036820
TCONS_00071865 other downstream 180207 53356779 ~ 53356896 (-) True XLOC_036812
TCONS_00071818 other downstream 2029924 51434496 ~ 51507179 (-) False XLOC_036786
TCONS_00071804 other downstream 2509150 51027839 ~ 51027953 (-) True XLOC_036779
TCONS_00071797 other downstream 3019200 50517782 ~ 50517903 (-) True XLOC_036773
TCONS_00071775 other downstream 3781204 49746232 ~ 49755899 (-) False XLOC_036760

Expression Profile

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