RNA id: TCONS_00072570


Basic Information

Item Value
RNA id TCONS_00072570
length 4939
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id XLOC_036830
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 54070161 ~ 54075099 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACACTGGTGAATTTGTATGGAAAACtttatttgataataaaaatagcattcaCAGACTTCTTTTTGATAGCTACATATACATCGTGATCCATCCAAACGGgaagaagagaaaaaaacttTACTGTGTGAGTCCACGTCTACTGAGACTAATGTTAAAACTTCATGAGTCAAATAAAGCTATGGACAATGCagaatttgtatatttatatatatatatttatatatttatatgcatagttttgtaaaaagaaaaaaaaacattagaccATATACATGTACAGCTTTATCGACAGAAAAAGCATTTAAAATCCATATAACTTTGCAGAGACCACAGACAGTGTACAAGATCTGTAGGAAAAAAGCAGGCGATCATCACGACAGATATTCCTGGAAAACCGTCATTCAAGCAAACGCTCCTGTGTGCCCAACGTCTTCCACAATAAACATCTTCTTCAGGTGGATTTGTACAGAGAAAGGCAACAGTTTCCTTACCTACACAGCTTTAAAGTACATACAGTAATAAAAACCTGTACAAAAGACAGTGGCTGATACGTTCATGTGATACAGTACTATTCAGATGGAGGAATTCCCTGCTCCCGCTCCTGGTCAGTACCGAAACTCTTGTGTTCCTGGTCAAACACGTGTTGCGGATGGAGGACACGGGTGGCTCAGTTTGGCAGATCTCGCCTGGAGTCTTTCAGATCAAACCTGAAGCTTCAGTGCAGAAACTGTACATTCAGGCCAGAATCCACAGATTGGTCCTATCCTGCCTTTGGTAGTCTACTTGTGGAGGTAAAGGTGGCTGCTGTGTCAGGGACAGAGCTCAGATTAAAATCAATGTGAATTAAAAAGGGCCGCAAAAGAATATGCAGGGACTAAAAGCAGACGGCTTTCTCTCGTTTGACATATATCCAGTGTTTCTGTGTTGCTGAAGCTCGACTGGAGCTCGCACATAGTGATAAAATATACAGCTTCAGTGCACTTTAAGCCACTTTTTAAAAGCACCTGATTCCTTCAGAAAATAGACATTTTGTAATAATTCGCTTTAAGCTAGCTTTGTGTCGAGTTTTCTCAACTGTGCACATGTGCCTTTAGTTTCATTTCAGGTGGTTatggtcaaaaataaagtctacatcaacaacaacaacaaaagaaaaaattgtGCCACAGGATACCCTTCTGTTGTCATCTTTGcgctttgtttgtgtgtttttttgcttGTGGGCGGCTCGTGCCTCAGTCCAGTGCAGGCTTCAGACAACCACAGTCAGATATCGACTAAGAGCAAAGATGCTTTCTCAAACGTCACATTTCAAttagtcaaaataaataaacagcttaaATACATCACTAAATTAAACAGTAGCATCAGAGTTCAGTTTCTATTAAATTGTACAAACAAGGAACTAAAAGTTAAACGCTTGTGCTCTGGTTCAGTCGGTCTGAATTGGGAGAAAACAAGAGGACACAAAGAGAACGCAACATTCTGGAACGGAATCATCTGCATCTTTTAACTGAACATGGCTCTTTGACACAGGATGTGGAAGCAGTGTGAGGGATGAGGGACGGTCCGCGCTGGTCAGGTCAGATGCTGAGGTCTGCGTGGTTCTCCTTGTACAGGCGTCTCTTTGCCGGAGAGTTCTGTCCTCGGCCCGCTACGCTGGCGGCTCTCAGAGCGTTATAATAATCTCTCAGCTGTGGAGTCGCTGCCTCCTCCAGGAAGCTGCCGTCGCTGCTGCTGTCCGACTTCCTGTGCAGCAGTGTGTCTGCCCCACTACTGAGGTGTGTCTTCGGAGAGCTGTTCAGCAGAGCGTTCCTGTTCTTCAGCCCGCGGTCAGGAGTGCGGCCCAGGGTGCTGGAGGTGAAGCCGTTCCTACCGGGGGTCTTGGGCTCTTTCTGCATCGGGACGCTCCTCTGAGGGGTGGAGGTCCAACCAAGCGGTTCCTGTGGGCCCCGATCTGGAGACGACTCCTTGTAGGAGCGGCTGGTGCGACGGTCCACAGACTTGGCCCGGCGGCGCTCTGGGGAAGGGTTGCGCTTTCGGCCGGAGGAGCGGTCCAGGGACCCGCTGCGCACCTGAGAGCCTGAGCTGCTCTGGGGGTCTGTGGACGGTTTGCGGCCTCGCCTCTGCAGGTCCTGGTTGGAGGTTTTCCTCCCGAATCCGCCCTCCTTCCTCAGGGTCTTGAAGAGCTTGGCGATGCCGCTCTCTGACTCTGACTTCTTGACCTTGGAGCGGTCCGGGGATGGTGACGGGCTGGGGTGGTTGTTCCAGGGCTGGTGGTGTGGAGCGCTGGGGAACAGGCCGGGGCCCAGGGCCTTCTCTGGGTCTCTGTGGTGTAGCTGGCGCTGCTTGGGCTGGGGTGGGGAGTGATATTCAGATGTGTAGCTGGACTCGGACGGATGATAAAAGGGGCCACTTGCCAGTAAGGGCCTCACTTCCGAATTATTTTGTGGCCTGGGTGAGGGAGGGTAGCTGTCATTTGGGCCGTCTGGAGATCAAAAGAAAAAGAGATTAGATTTAAAGCACCCGACACCACGTCACATCAAACTGACAGCACATACAAGCAGAAAAATCACGCAACAACATCTACACGAACAGTCAAAGGTGTGGACAAGGGAACTCATTTTATATGGTCTATAAGTCATGCAAACCAGGACTAAGCCTGTTCCTGAGAGTTCGGCTTAAGCACATCTGCGCAGATGTTTCTGGATACCGTAATTCACCTGCTCAGGTGGGTTTAAACAGGGCAGAtgataaactctgcaggacaggtCTGGACTCACCTGGTCTACATGACTGAATTACACAGATGGTAGTATGGAAATTAAATGGTGACCAAAAGTGCTAAACAAAGCAACACTAGCATTTATTTAGGGTGAGACTGAGCAAAGCTGGAGCTCCTGAGAGGGGAAATGGGACAGAACAGAAATGAAGGCATCAGCAGCAGAGCACACTTCTCGACGTGTTGTTTGGGAATATCTGAAGTCATCATGTTTAACTCTTTCTGATGCAGAAGGTTTGTCTGATCAGTTTAATAGTTGCCTATGCACAAAAGGTCAGCAAGGGTGTTATGGTGCCTGTTAAAGTGTTAAAACAGTTTGGTGGATCAAGTGTTTTTAGAATGAACCCAGAAACACCTAATCGTAATCTCTCAGAACAGGCTCTGCTTCTCTGACGACACGACTGTGCGATGGCGAACACACCACAGGATAACTCTGATGGAGAAACACACTCTACTGCTCAGCACTGTGAGGACATCAGCAGATTTCTAGATTTAACAGCACTGCACTGACCAACTATCATCAGGCATGGTAAAAATGGTAAAATGTGGCATGTCCAGACTGACATGACGAGGTGCTCTTCCACCATTATATATCAGATCAGCAGAACTAACAGCTCAGGATCCGCTTGAGGATGAGGAGCATTATCTAGACCCAGAGGAGATGGGGAGACCCTCCACAGACCAGAAGAGCCGACTCACACACGTCTCTCACGGTGAGCACTCATACAGGTACTTAAACTCAATCACAGGACTCTCCTGCGGGGTTTAAGCCTGAATCTATGCTAGCAGAAggacagcagaagaccacactgtgAACCGCAGGAACATCAGTGCGTCTGCTTGCTTTACTCCTCAACATGACGGATACTATCAACAGAATATTATCTGATCTCAAGATCCCGATCACAAAACAGGATGGACCAAACTGAGAAAGCTAGATGAGGAAAACAACATAACATTATGGAGGGGTGTGGAAATAGTCTTCTCTCATACATTTTTTCCCAAATCCCGCTTACAAAATCACACTTCAGTATGTGTTACAAGTGAACCGCACAAACCTTTCTACATGGATATTAAACATGCCAACACATTTCAACAAtcaacagaaaaataataaactatactTGTTTAGGTGTGTACATCATAACCTGTAGTCTAAGACCTTTTAACATCAGATATAAACGGTGCATGTTTCCAAACTGGACATTGATGATGATGAAATATGTCAcgaaaacaaaatataaactgCCAAACACTGGCCTCAAACAGCCTGACCCATCAGCCAATCCCGTCTTTAATCGACTAAAACAGCTAAAACAAGGATCAACGTGATGATCAGGgaaagtctaatagacatctaagaacagCCAGTCATCATATGGACAGACTCATGCATGGTCATTCAGTCCTGTGCACTTGGGGACAGGTCTAGTTTTGGGCTTTTCTAAtccgtctattagattttcagcCTTTACGTCTGTTTTTAGGCACTTATTGACGACCTTTCAACAAAAAGGATTGCTGGGTAGTTTTCTTCATGCAAAATGTGGATTTTTGCCATGTGACGCAGATGGTTTTTGTGATATTGGCCCATGCGTGTGATCAGACAGACAGGAATATGTCAGCAGGGTCACGCATGCATCTGAGCGTCTTCATGACAGACAGTAATGCATGCCTGACAGCGGGAGATGGAGCGTGGATGGGGATCTGCTGAGGGCCTGAGCATCACTGGGTGACGGAGGAGAACACAGAGCGTGCTTTACAAACCGTGGCTTGGTTTTGACCCATAAGGTAGAAGCACGGCTCGCCCAGCTTATCGTTCCTCAGACAGGCAGCGAGATGAGGAGCCATCATGGCTAAGGAGAGCGCAGATCCGCAAGAGAAAAACAGACAGATCAAGCAAACATGTCTCTCTGCAGGGCATGGAGAACAGCAGAACTGACGCAGATTCTCCAGGATGACAGCAGGACAGAAGAAGAGCTGCGGGACTCACCGTACTCCGGCACGGACCCGTCTCCTCGCTTCAGCACCAGCCTCGCCCAGCGGCCGCCCGTCTTGATCAGCTCGATGGCTCGAGAATGCTTCATGTTCTTTGTGCTTTCTCCATTAATCTCCAGAATTTCATCTCCAACCTGTAAAGAAGGGGAAGACACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072569 lncRNA downstream 1865 54061697 ~ 54068296 (-) True XLOC_036829
TCONS_00071881 lncRNA downstream 218576 53841302 ~ 53851585 (-) True XLOC_036824
TCONS_00072568 lncRNA downstream 288309 53781481 ~ 53781852 (-) True XLOC_036822
TCONS_00071873 lncRNA downstream 527742 53541066 ~ 53542419 (-) True XLOC_036816
TCONS_00071872 lncRNA downstream 527747 53539571 ~ 53542414 (-) False XLOC_036816
TCONS_00072093 lncRNA upstream 36930 54112029 ~ 54113768 (-) True XLOC_036832
TCONS_00072571 lncRNA upstream 91954 54167053 ~ 54168171 (-) True XLOC_036833
TCONS_00072572 lncRNA upstream 138910 54214009 ~ 54216505 (-) False XLOC_036834
TCONS_00072573 lncRNA upstream 138910 54214009 ~ 54216516 (-) False XLOC_036834
TCONS_00072574 lncRNA upstream 138910 54214009 ~ 54216530 (-) False XLOC_036834
TCONS_00071885 mRNA downstream 78977 53979248 ~ 53991184 (-) True XLOC_036828
TCONS_00071884 mRNA downstream 109812 53948194 ~ 53960349 (-) True XLOC_036827
TCONS_00071883 mRNA downstream 143933 53918234 ~ 53926228 (-) True XLOC_036826
TCONS_00071882 mRNA downstream 173179 53862745 ~ 53896982 (-) True XLOC_036825
TCONS_00071880 mRNA downstream 266732 53794022 ~ 53803429 (-) True XLOC_036823
TCONS_00071886 mRNA upstream 1096 54076195 ~ 54077740 (-) True XLOC_036831
TCONS_00071887 mRNA upstream 136762 54211861 ~ 54216499 (-) False XLOC_036834
TCONS_00071888 mRNA upstream 145452 54220551 ~ 54223316 (-) True XLOC_036835
TCONS_00071889 mRNA upstream 227601 54302700 ~ 54304381 (-) True XLOC_036836
TCONS_00071865 other downstream 713265 53356779 ~ 53356896 (-) True XLOC_036812
TCONS_00071818 other downstream 2562982 51434496 ~ 51507179 (-) False XLOC_036786
TCONS_00071804 other downstream 3042208 51027839 ~ 51027953 (-) True XLOC_036779
TCONS_00071797 other downstream 3552258 50517782 ~ 50517903 (-) True XLOC_036773
TCONS_00071775 other downstream 4314262 49746232 ~ 49755899 (-) False XLOC_036760

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1594207 True 2468 lncRNA 0.39 2 NC_048580.1 60140222 ~ 60183399 (-)