RNA id: TCONS_00071887


Basic Information

Item Value
RNA id TCONS_00071887
length 1505
RNA type mRNA
GC content 0.51
exon number 10
gene id XLOC_036834
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 54211861 ~ 54216600 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCGCGCTCATCCGAGTGTGTTTAACCCGCTTCTGCTCAGCGTTCACAACTCACAGCGTCTGAGAAACCACCAGCGCCTGAGCTCCAGAGGATCATGAGCAGCGAGCAGGTgtgtttctctctgtgtgtgtgtaagagagagagagagagagagagagagtgagcgaTTGAACAATCACAACAGCATTGGTTGAGGAGTGTTGTTGAGTCCTAATTCAGCTGTCATCAGTGTGAAGATCTGCACAGAGCCATGCCTCACACCCGCCACAGCAGAAGAAGAGACGCGgagaaatacaaacacacacacctgacccCAGATCAGCATCCAGAAGCAGACACACACCCACATCTGACCCCAGATCAGCATctagaagcagacacacacacacatctgacccCAGATCAGCATcaagaagcagacacacacacacatctgacccTAGATCAGCATCAAGaagcagacacacactcacatctgacCCCAGATCAGCATctagaagcagacacacacacacacctgaccccAGATCAGCATCCAGaagcagacacacactcacatctgacCCCAGATCAGCATctagaagcagacacacacacacacctgaccccAGATCAGCATccagaagcagacacacacacacacctgaccccAGATCAGCATCCAGaagcagacacacactcacatctgacCCCAGATCAGCATCCAGaagcagacacacactcacatctgacCCTAGATCAGCCTCCGGATGACTGCGCTGGAGAAGAGATGAGGCAGAAACACTCTGGCTGTGCTTCACCTGCTGGAAACTCTGAGAGTCGCCTGAAGAGAACTGTAGAGAAGCGCAAGACCAGTCCATACTTCAGCAGGAGGAGTGAGGctgTGCGCCGGCCGAGGCGTAAGGTCTTCAGGAAGTGGACTCCTCCTCGCTCCCCCTTTCGGCTGGTGCAGGAGACGCTCTTCCATGACCCCTGGAGACTCCTGGTGGCCACTATATTCCTCAACAAGACCaatgcgcGTGTGGCTCTGCCGGTGCTGTGGGAGTTTCTGGAGTGTTACCCCAGTGCTGCAGTGACCCGTGTGAGTGACTGGCGCCCCCTGTCTGTGCTGTTGCAGCCGCTCGGGCTCAGCCAACTGAGAGCCAAAACACTCATACGCTTCTCTGATGAGTACATCAGTAAATCATGGCAGTACCCTATCGAGCTGCACGGCATCGGCAAATACGGCAACGACTCGTACCGCATCTTCTGTGTGGACGAGTGGAGAGAGGTCACTCCAGACGATCATAAACTCAACGATTATCACGCCTGGCTCTGGAAAAACCACAAACAATTAGGAATCTGATTTCATCTCTTTTAATAAACTATAATGTCCGCAGCGCCACAGGTCGATCACAGATCCTGCAGCTGTTTCTTGGCTTGTTTGTTTCATGTTCATCATGTTTGTTCAGGATTTGCAGATAATGTTCATGTTGAAGATTtaaataaatgagattttttaTCTT

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008263 pyrimidine-specific mismatch base pair DNA N-glycosylase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03410 Base excision repair
ko03036 Chromosome and associated proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040213-1 Predicted to enable DNA binding activity. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Is expressed in retina and trunk.

Ensembl:

ensembl_id ENSDART00000193678

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072571 lncRNA downstream 43690 54167053 ~ 54168171 (-) True XLOC_036833
TCONS_00072093 lncRNA downstream 98093 54112029 ~ 54113768 (-) True XLOC_036832
TCONS_00072570 lncRNA downstream 136762 54070161 ~ 54075099 (-) True XLOC_036830
TCONS_00072569 lncRNA downstream 143565 54061697 ~ 54068296 (-) True XLOC_036829
TCONS_00071881 lncRNA downstream 360276 53841302 ~ 53851585 (-) True XLOC_036824
TCONS_00071886 mRNA downstream 134121 54076195 ~ 54077740 (-) True XLOC_036831
TCONS_00071885 mRNA downstream 220677 53979248 ~ 53991184 (-) True XLOC_036828
TCONS_00071884 mRNA downstream 251512 53948194 ~ 53960349 (-) True XLOC_036827
TCONS_00071883 mRNA downstream 285633 53918234 ~ 53926228 (-) True XLOC_036826
TCONS_00071882 mRNA downstream 314879 53862745 ~ 53896982 (-) True XLOC_036825
TCONS_00071888 mRNA upstream 4052 54220551 ~ 54223316 (-) True XLOC_036835
TCONS_00071889 mRNA upstream 86201 54302700 ~ 54304381 (-) True XLOC_036836
TCONS_00071865 other downstream 854965 53356779 ~ 53356896 (-) True XLOC_036812
TCONS_00071818 other downstream 2704682 51434496 ~ 51507179 (-) False XLOC_036786
TCONS_00071804 other downstream 3183908 51027839 ~ 51027953 (-) True XLOC_036779
TCONS_00071797 other downstream 3693958 50517782 ~ 50517903 (-) True XLOC_036773
TCONS_00071775 other downstream 4455962 49746232 ~ 49755899 (-) False XLOC_036760

Expression Profile

//