Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_036836 |
| gene name | exorh |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007119.7 |
| NCBI id | CM002892.2 |
| chromosome length | 54304671 |
| location | 54302700 ~ 54304381 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| exorh | Enables G protein-coupled photoreceptor activity and retinal binding activity. Acts upstream of or within absorption of visible light and circadian regulation of gene expression. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; heart; nervous system; testis; and yolk. |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0050896 | response to stimulus | biological_process |
| GO:0032922 | circadian regulation of gene expression | biological_process |
| GO:0007601 | visual perception | biological_process |
| GO:0007602 | phototransduction | biological_process |
| GO:0009416 | response to light stimulus | biological_process |
| GO:0018298 | protein-chromophore linkage | biological_process |
| GO:0016038 | absorption of visible light | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0009881 | photoreceptor activity | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| GO:0008020 | G protein-coupled photoreceptor activity | molecular_function |
| GO:0016918 | retinal binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-991229-12 | Enables G protein-coupled photoreceptor activity and retinal binding activity. Acts upstream of or within absorption of visible light and circadian regulation of gene expression. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; heart; nervous system; testis; and yolk. |
| ensembl_id | ENSDARG00000111860 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00071889 | True | 1242 | mRNA | 0.52 | 2 | 54302700 | 54304381 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_036835 | trh | coding | downstream | 79384 | 54220551 ~ 54223316 (-) |
| XLOC_036834 | mbd4 | coding | downstream | 86100 | 54211861 ~ 54216600 (-) |
| XLOC_036833 | NA | coding | downstream | 134529 | 54167053 ~ 54168171 (-) |
| XLOC_036832 | NA | coding | downstream | 188932 | 54112029 ~ 54113768 (-) |
| XLOC_036831 | rho | coding | downstream | 224960 | 54076195 ~ 54077740 (-) |
| XLOC_036830 | NA | non-coding | downstream | 227601 | 54070161 ~ 54075099 (-) |
| XLOC_036829 | NA | non-coding | downstream | 234404 | 54061697 ~ 54068296 (-) |
| XLOC_036824 | CABZ01090219.1 | non-coding | downstream | 451115 | 53841302 ~ 53851585 (-) |
