XLOC_036831 (rho)


Basic Information

Item Value
gene id XLOC_036831
gene name rho
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 54076195 ~ 54077740 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071886
CGGTCCTGCCTCGTTTCTTCACAGTCCTGCCCAGACATCTAGAGATTACCGCAGAAGGGGCTGAGCGCCACATCCAACCGCAGCCATGAACGGTACAGAGGGACCGGCATTCTACGTGCCTATGTCCAATGCCACCGGGGTAGTCCGGAGCCCATACGAATACCCACAGTACTACCTGGTGGCGCCCTGGGCATATGGCTTGCTGGCGGCCTACATGTTCTTCCTCATCATCACCGGCTTCCCCGTCAACTTCCTCACGCTGTACGTCACCATCGAGCACAAGAAGCTGCGCACACCCCTCAACTACATCCTGCTGAACCTGGCCATTGCCGACCTCTTCATGGTGTTCGGCGGCTTCACCACCACCATGTACACCTCCTTGCACGGCTACTTCGTGTTCGGCCGCCTGGGCTGCAACCTGGAGGGCTTCTTTGCCACCCTGGGCGGTGAGATGGGGCTATGGTCGCTTGTAGTACTGGCCATTGAGCGCTGGATGGTGGTCTGCAAACCGGTCAGCAACTTCCGTTTCGGGGAGAACCATGCCATCATGGGGGTGGCCTTCACCTGGGTCATGGCCTGCTCCTGTGCCGTGCCGCCACTGGTGGGCTGGTCGCGTTACATCCCCGAGGGCATGCAGTGCTCCTGCGGCGTCGACTACTACACCCGCACTCCCGGTGTCAACAACGAGTCCTTCGTCATCTACATGTTCATCGTGCACTTCTTCATCCCACTGATAGTCATCTTCTTCTGCTATGGCCGGCTGGTGTGCACTGTGAAGGAGGCGGCAGCGCAGCAGCAGGAGTCCGAGACCACACAGCGGGCCGAGCGCGAGGTCACCCGCATGGTCATCATCATGGTCATCGCCTTCCTCATCTGCTGGTTGCCCTACGCCGGCGTGGCCTGGTACATCTTCACCCACCAGGGCAGCGAGTTCGGGCCCGTCTTCATGACCCTGCCCGCCTTCTTCGCCAAGACGTCCGCCGTCTACAACCCCTGCATCTACATCTGCATGAACAAGCAGTTCCGTCACTGCATGATCACCACCCTGTGCTGCGGCAAGAACCCCTTCGAAGAGGAAGAGGGCGCCTCCACCACCGCCTCCAAGACCGAGGCTTCGTCCGTGTCTTCCAGCTCCGTGTCTCCGGCGTAAACTCTCCTTCCAGACACTCTCGAAGCAGCGACCTGCACTGGGCTCCCACGGCAAACCACACAGAGACCACGAAGCGCTCAGCCCAGGGAAACGAGCGACCGCTACCACTTGCAGAAAAAAATGTCTGTCAGTTTTcctttttgtatttttacaaaaCCCAATTGGTTCAACCAAAAGACAGTTTTGAGAGAGGACAGACCCTGTTCTGGTTTCAGTACATCATCCAGCGAGTCCAGCGTAACGGTGCATAAGATCCTTCCTGTTCTCTCCTCCTAAAACGCAGCAGAAGGAAACACATCTTAACTCTCTTACTGCTGGACTCCTTATACTGGCTTTGTTGTGATTGTAGAGGCATGTATTCAAGGCAACGTAACAATAAAAAGCACTTTGCAAATT

Function

symbol description
rho Enables G protein-coupled photoreceptor activity and retinal binding activity. Acts upstream of or within absorption of visible light. Located in photoreceptor outer segment. Is expressed in several structures, including digestive system; endocrine system; photoreceptor cell; presumptive neural retina; and visual system. Used to study retinitis pigmentosa. Human ortholog(s) of this gene implicated in congenital stationary night blindness autosomal dominant 1; fundus albipunctatus; night blindness; retinitis pigmentosa; and retinitis pigmentosa 4. Orthologous to human RHO (rhodopsin).

GO:

id name namespace
GO:0016056 rhodopsin mediated signaling pathway biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0016038 absorption of visible light biological_process
GO:0007165 signal transduction biological_process
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0097381 photoreceptor disc membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005502 11-cis retinal binding molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0016918 retinal binding molecular_function

KEGG:

id description
ko03018 RNA degradation
ko04744 Phototransduction
ko04320 Dorso-ventral axis formation
ko01002 Peptidases and inhibitors
ko03021 Transcription machinery
ko03019 Messenger RNA biogenesis
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-990415-271 Enables G protein-coupled photoreceptor activity and retinal binding activity. Acts upstream of or within absorption of visible light. Located in photoreceptor outer segment. Is expressed in several structures, including digestive system; endocrine system; photoreceptor cell; presumptive neural retina; and visual system. Used to study retinitis pigmentosa. Human ortholog(s) of this gene implicated in congenital stationary night blindness autosomal dominant 1; fundus albipunctatus; night blindness; retinitis pigmentosa; and retinitis pigmentosa 4. Orthologous to human RHO (rhodopsin).

Ensembl:

ensembl_id ENSDARG00000002193

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071886 True 1546 mRNA 0.57 1 54076195 54077740

Neighbor

gene id symbol gene type direction distance location
XLOC_036830 NA coding downstream 1096 54070161 ~ 54075099 (-)
XLOC_036829 NA coding downstream 7899 54061697 ~ 54068296 (-)
XLOC_036828 SLC35E2B coding downstream 85011 53979248 ~ 53991184 (-)
XLOC_036827 cdk11b coding downstream 115846 53948194 ~ 53960349 (-)
XLOC_036826 ubiad1 coding downstream 149967 53918234 ~ 53926228 (-)
XLOC_036832 NA coding upstream 34289 54112029 ~ 54113768 (-)
XLOC_036833 NA coding upstream 89313 54167053 ~ 54168171 (-)
XLOC_036834 mbd4 coding upstream 134121 54211861 ~ 54216600 (-)
XLOC_036835 trh coding upstream 142811 54220551 ~ 54223316 (-)
XLOC_036836 exorh coding upstream 224960 54302700 ~ 54304381 (-)
XLOC_036824 CABZ01090219.1 non-coding downstream 224610 53841302 ~ 53851585 (-)
XLOC_036822 NA non-coding downstream 294343 53781481 ~ 53781852 (-)
XLOC_036813 NA non-coding downstream 608492 53464218 ~ 53467703 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_00148346_00149410 RHO coding CI01000050 null 148220 ~ 149781 (+)
bowfin (Amia calva) AMCG00017141 LOC105912243 coding CM030122.1 CM030122.1 47965527 ~ 47966591 (-)