XLOC_036817 (parapinopsina)


Basic Information

Item Value
gene id XLOC_036817
gene name parapinopsina
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53544094 ~ 53548145 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071874
atgtgATTTTGCTCCACATGCATGAAGAAATGGAGTCTGAAACGAGCACGGCTGCATCAGGAAGCATTGCAGAGGTCATGCCGAGGATGGGTTACACTATCCTGGCCGTGATCATCGGTGTTTTCTCGGTGTGTGGTGTTATTCTGAACGTGACAGTGATCACGGTGACTCTCAAATATAAACAGCTCCGGCAGCCGCTCAACTTTGCGCTGGTTAATCTGGCGGTGGCGGATCTGGGGTGCGCTGTGTTTGGAGGATTGCCCACTGTAGTGACCAACGCCATGGGGTACTTCAGCCTGGGCAGAGTCGGCTGTGTGCTGGAGGGCTTCGCTGTGGCCTTCTTCGGAATCGCGGCTCTGTGTTCGGTGGCCGTCATTGCATTGGAGCGCTGCATGGTGGTCTGCAGGCCCGTGGGCTCCATCAGCTTCCAGACGAGGCACGCTGTGTTTGGGGTGGCGGTGTCCTGGCTGTGGTCGTTCATCTGGAACACTCCGCCGCTGTTCGGATGGGGTCGGTTCGAGCTGGAGGGCGTCCGGACGTCCTGCGCTCCAGACTGGTACAGCAGAGATCTGGCCAACGTCTCCTTCATCGTCTGCTACTTCCTGCTGTGCTTCGCCCTGCCCTTCTCCGTCATCGTCTACTCATACACTCGCCTGCTCTGGACCCTGCGGCAGGTGAGTCGTCTGCAGGTGTGTGAGGGTGGCAGCGCGGCGCGGGCAGAGGCGCAGGTGTCCTGTATGGTGGTGGTGATGATCTTGGCCTTCCTCCTGACCTGGCTGCCGTACGCCTCCTTCGCCCTGTGTGTGATCCTGATCCCAGAGCTGTACATCGACCCCGTGATCGCCACCGTGCCCATGTACCTGACCAAGAGCAGCACCGTCTTCAACCCCATCATCTACATCTTCATGAACAGACAGttcaGGGATCGAGCGCTGCCTTTCCTTCTATGCGGCAGAAACCCGTGGGCTGCTGAagctgaagaagaagaagaagaaactacAGTATCATCCGTCAGCCGGAGCACCAGCGTCTCTCCTGCATGACCTCACATTATTACATctgcttaaagcaggggtg

Function

symbol description
parapinopsina Enables G protein-coupled photoreceptor activity. Acts upstream of or within absorption of UV light; phototransduction, UV; and phototransduction, visible light. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; eye; gut; heart; and integument.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0016039 absorption of UV light biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101129-1 Enables G protein-coupled photoreceptor activity. Acts upstream of or within absorption of UV light; phototransduction, UV; and phototransduction, visible light. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; eye; gut; heart; and integument.

Ensembl:

ensembl_id ENSDARG00000116976

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071874 True 1077 mRNA 0.58 4 53544094 53548145

Neighbor

gene id symbol gene type direction distance location
XLOC_036816 selenok coding downstream 1670 53537103 ~ 53542424 (-)
XLOC_036815 actr8 coding downstream 8791 53517998 ~ 53535303 (-)
XLOC_036814 chdh coding downstream 53718 53474755 ~ 53490376 (-)
XLOC_036813 NA coding downstream 76391 53464218 ~ 53467703 (-)
XLOC_036812 CU914536.1 coding downstream 187198 53356779 ~ 53356896 (-)
XLOC_036818 lrtm1 coding upstream 91480 53639625 ~ 53649294 (-)
XLOC_036819 wnt5a coding upstream 122250 53670395 ~ 53680653 (-)
XLOC_036820 tlr9 coding upstream 182223 53730368 ~ 53735399 (-)
XLOC_036821 apeh coding upstream 199780 53747925 ~ 53773539 (-)
XLOC_036822 NA coding upstream 233336 53781481 ~ 53781852 (-)
XLOC_036807 NA non-coding downstream 608624 52933059 ~ 52935470 (-)
XLOC_036805 NA non-coding downstream 661318 52877822 ~ 52882776 (-)
XLOC_036801 NA non-coding downstream 912610 52627507 ~ 52631484 (-)
XLOC_036824 CABZ01090219.1 non-coding upstream 293157 53841302 ~ 53851585 (-)
XLOC_036829 NA non-coding upstream 513552 54061697 ~ 54068296 (-)
XLOC_036830 NA non-coding upstream 522016 54070161 ~ 54075099 (-)
XLOC_036832 NA non-coding upstream 563884 54112029 ~ 54113768 (-)

Expression


Co-expression Network