RNA id: AMCG00002239


Basic Information

Item Value
RNA id AMCG00002239
length 1299
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00002239
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8712465 ~ 8720117 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGATATTGGAGACTATGTAGGTACAGACATTGAAATTTCCTGGTTACCTAACCTGGATGATTTAATGAAGGGCTATGCACGTAATTTTCGCCCTGGGATAGGAGGACCTCCAGTGAATGTAGCAATGGCTATAGAAGTAGCTAGCATTGATCACATCTCAGAAGCCAACATGGAGTACACAATGACAGTGTTTCTGCGTCAGAGCTGGAGGGACGATCGTCTCTCCTACAACCACACCAACAAGACCCTTGGCCTGGACAGCCGCTTTGTCGATAAGCTGTGGCTCCCGGACACGTTCATCGTCAACGCCAAGTCGGCCTGGTTTCATGATGTCACGGTGGAGAACAAACTCATCCGCCTGCAGCCCGATGGAGTTATACTGTACAGTATCCGAATTACCTCAACAGTTGCGTGTGACATGGATCTCACCAAATACCCAATGGACGAACAGGAGTGCATGCTGGATCTGGAGAGCTATGGCTACTCCTCCGAGGACATTGTCTACCACTGGTCTGAGAGCCAGGCTCATATACATGGGCTGGACAAACTGGAGCTCTCGCAGTTCACCATCACCGACTACAGATTTGACACTGAGATGATGAACTTCAAATCAGCTGGTCGCTTCCCTCGGCTGAGCCTGCGATTCCAGTTACGGCGGAATCGTGGTGTTTACATCATCCAGTCATATGTGCCTTCCATCCTATTGGTCGCCATGTCATGGGTCTCCTTTTGgatcagccaatcagcagtaCCTGCAAGGGTTTCATTAGGTATCACCACCGTTCTCACAATGACCACTCTGATGGTCAGCGCCCGCTCATCCCTCCCCAGGGCCTCAGCCATCAAAGCCCTGGATGTCTACTTCTGGATCTGCTATGTCTTTGTCTTCGCGGCTTTGGTGGAATACGCCTTTGCCCACTACAACGCTGACTACATGAGAAAACAGAGGGCGAAAATCAAGGCGAGCAAAATGGCAAGCGAGtCCATTGTAAAAAATGGCAAGCAGGCCATGGTTCTCTTCTCCCTATCAGTAACAGGCATGAACCAGGGACTGCTGCTTTCTAACCGGCAAAGCCGCGCAAAGAAGCCTCCTGGGGATCCCTGTGGTACGGACGAGGTTGAAAACGGGAAGACAAAAGCCAAGAAGCCTGATGGAAGCAAGGAGAAAAAGAGCAGTCTGAAGTCTGTGTTCAAACCCATTGATGCGGACACCATCGACATCTACTCTAGGGCAGTCTTCCCTGCAGCCTTTGCAGCAGTCAATGTCATCTACTGGGTAGCTTACACCATGTAA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05184 GABRD; gamma-aminobutyric acid receptor subunit delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152667 lncRNA downstream 695390 8016064 ~ 8017075 (-) True G121789
TU152604 lncRNA downstream 867149 7830193 ~ 7845316 (-) True G121754
TU152558 lncRNA downstream 1048788 7662986 ~ 7663677 (-) True G121718
TU152556 lncRNA downstream 1053614 7657832 ~ 7658851 (-) True G121716
TU152525 lncRNA downstream 1149718 7561077 ~ 7562747 (-) True G121689
TU152800 lncRNA upstream 105314 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 148528 8868645 ~ 8870698 (-) True G121885
TU152845 lncRNA upstream 212046 8932163 ~ 8933163 (-) True G121912
TU152874 lncRNA upstream 298009 9018126 ~ 9018327 (-) True G121935
TU152969 lncRNA upstream 418330 9138447 ~ 9213429 (-) True G122019
AMCG00002238 mRNA downstream 3528 8706529 ~ 8708937 (-) True AMCG00002238
AMCG00002237 mRNA downstream 189635 8496082 ~ 8522830 (-) True AMCG00002237
AMCG00002234 mRNA downstream 685441 8022677 ~ 8027024 (-) True AMCG00002234
AMCG00002233 mRNA downstream 698247 8012977 ~ 8014218 (-) True AMCG00002233
AMCG00002226 mRNA downstream 733383 7969903 ~ 7979082 (-) True AMCG00002226
AMCG00002240 mRNA upstream 90202 8810319 ~ 8813591 (-) True AMCG00002240
AMCG00002247 mRNA upstream 178508 8898625 ~ 8903588 (-) True AMCG00002247
AMCG00002249 mRNA upstream 213852 8933969 ~ 8946187 (-) True AMCG00002249
AMCG00002251 mRNA upstream 236993 8957110 ~ 8982144 (-) True AMCG00002251
AMCG00002252 mRNA upstream 275585 8995702 ~ 9005887 (-) True AMCG00002252
TU152605 other downstream 873054 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 4492588 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 4925921 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 4996213 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 5584521 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 1111794 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 1121978 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 2804776 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 2947638 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 3011500 11731617 ~ 11734324 (-) True G122597

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071863 False 1302 mRNA 0.52 10 NC_007119.7 53185080 ~ 53198154 (-)
grasscarp (Ctenopharyngodon idella) CI01000050_01644444_01659372.mRNA True 1343 mRNA 0.48 8 CI01000050 1644444 ~ 1659412 (+)