RNA id: TU153660


Basic Information

Item Value
RNA id TU153660
length 704
RNA type TUCP
GC content 0.63
exon number 3
gene id AMCG00002327
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11647911 ~ 11685089 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGGCGCGAGGGCTCATGGTGGATCCGCGCGGAGCGAGGCGCTGCACTCTGCAACACGGATACCGAACCGGCGCGGATTAAACTGCACCAAAACACTCTGTATGAACGGGGGACACGGGCACACAGTATGGTCCGGGAAACCAGACACCTCTGGGTGGGGAATTTGCCCGAAAATGTACGAGAGGAGAAAATTATCGAACATTTCAAACGATATGGCCGTGTGGAGAGTGTCAAGATCCTGCCCAAGCGTGGCTCAGAGGGCGGGGTGGCGGCCTTTGTGGATTTTGTGGACATTAAGAGCGCGCAGAAGGCGCACAATTCCGTCAACAAAATGGGGGATCGCGACCTGAGGACCGATTACAATGAGCCGGGGACCATCCCCAGCGCGGCGCGCGGGCTGGACGACACGCTGTCCATAGGCTCGCGCGGCCGTGAGGTCCCGGGCTTCCGTGGAGGCCCGGGGGGGGCGGTGTACGGACCCCCCACCTCGCTGCACAGCAGGGAGGGCCGCTATGAGCGAAGACTGGACGGgGCTTCCGACACACGGGAGCGTGCTTATGATCACAGTGCCTATGGACACCATGAGCGCGGGGCAGCAGGGTTCGAGCGTGGGGCAGCAGGATTCGAGCGTGCCCGCCACTACGACACGGATTACTACCGCGACAGGACACTGCCGCATGGCGGGGGGGGCAGTGGGGGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153646 lncRNA downstream 39320 11601972 ~ 11628435 (-) True G122530
TU153524 lncRNA downstream 217964 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 258169 11407524 ~ 11409586 (-) True G122432
TU153446 lncRNA downstream 393228 11267564 ~ 11274527 (-) True G122376
TU153396 lncRNA downstream 820554 10837804 ~ 10847201 (-) False AMCG00002301
TU153665 lncRNA upstream 29320 11714409 ~ 11716145 (-) True G122548
TU153668 lncRNA upstream 33441 11718530 ~ 11718969 (-) True G122551
TU153761 lncRNA upstream 159303 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 161992 11847081 ~ 11848192 (-) True G122633
TU153766 lncRNA upstream 172302 11857391 ~ 11859325 (-) True G122636
AMCG00002326 mRNA downstream 36846 11629149 ~ 11630909 (-) True AMCG00002326
AMCG00002328 mRNA downstream 47096 11612396 ~ 11620659 (-) True AMCG00002328
AMCG00002320 mRNA downstream 121298 11542691 ~ 11546457 (-) True AMCG00002320
AMCG00002321 mRNA downstream 126476 11533550 ~ 11541279 (-) True AMCG00002321
AMCG00002322 mRNA downstream 135740 11531278 ~ 11532015 (-) True AMCG00002322
AMCG00002333 mRNA upstream 9248 11694337 ~ 11700677 (-) True AMCG00002333
AMCG00002334 mRNA upstream 18247 11703336 ~ 11705695 (-) True AMCG00002334
AMCG00002335 mRNA upstream 23169 11708258 ~ 11711311 (-) True AMCG00002335
AMCG00002336 mRNA upstream 35127 11720216 ~ 11725951 (-) True AMCG00002336
AMCG00002338 mRNA upstream 82195 11767284 ~ 11772145 (-) True AMCG00002338
TU153575 other downstream 140400 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1814680 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1834531 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 3828344 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 7447878 4214715 ~ 4219877 (-) True G120993
TU153720 other upstream 46528 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 163381 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 186773 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 310739 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1343108 13028197 ~ 13029406 (-) False G122862

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044111 False 10999 mRNA 0.44 15 NC_007134.7 24440040 ~ 24483440 (-)